Gene detail

Gene detail information of Glyur001386s00028376

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G10340.1	6.00E-114	light harvesting complex of photosystem II 5
NR	KDP37799.1	0	hypothetical protein JCGZ_06701 [Jatropha curcas]
Swissprot	tr\|Q9XF89\|CB5_ARATH	1.00E-152	Chlorophyll a-b binding protein CP26, chloroplastic (Precursor)
trEMBL	tr\|A0A067L139\|A0A067L139_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP37799.1}

Sequence

Transcript Sequence

>Glyur001386s00028376.1
TGGAGTTTTACTACAAATATGTGGTAGCCATTACTTCTATTGAGTCGGAAGGAAATTACAAAAAGCAAAAAAAGCCTCAAATGAATCTCAACTTCAACATTGCTTTTGAAGGTAAAGGGAATGGAATGGATGGTTGAAAAAAGTCCAAGAAATAGGATAAAACATGTTATCCAAACTCAAGCAATCTACCAGCTCAGGAGCTACCCACATCAAATATTGACCAATCAAATCCTTGCATTGGATTACACACCTCTAGTGTAGACCAATCAAACCCCATGATCATGAATCTGACGTGGCATGTCCACATCCACCAAANCATGCATAACCATGTATTATATCTATTCTTATTTTCTTATTACTTCTCCATCCTTGAATCAGCACCATATTGATTCACTCACACCTTGAGGTTTTTGTGTGAGTCTTTTTTCCAAAAAAATGGCTTCCCTTGCTGCTTCCACTGCAGCTGCTTCACTTGGCATGTCAGAAATGCTTGGAAACCCCATCAACTTCAGCAGTGGTGCCACCAGGTCAGCACCTTCTACACCTGCCACCTTCAAAACTGTGGCTCTTTTCTCCAAAAAGAAGGCAGCACCACCACCAAAGCAGAAACCTTCTTCTGTTTCACCTGCCAATGAGGAGCTCGCCAAGTGGTATGGTCCTGACAGAAGGATCTTCTTGCCAGAGGGTCTATTGGACCGATCTGAGATCCCAGAGTACTTGACCGGAGAAGTCCCCGGAGACTATGGTTATGACCCATTTGGTCTTAGCAAGAAGCCTGAAGACTTTGCCAAATATCAAGCATTTGAGTTGATTCATGCCAGATGGGCAATGCTTGGTGCTGCAGGATTCATCATTCCTGAGGCCTTAAACAAATTTGGAGCCAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGAAAACCCATCCCCATCAATCTTATTCTTGCTGTCGTTGCAGAGGTTGTTCTTTTGGGAGGTGCAGAGTACTACAGAATTACCAATGGGCTGGATTTCGAAGACAAGCTTCATCCAGGAGGTCCATTTGATCCATTGGGGCTAGCAAAGGATCCAGACCAGGCAGCACTGCTAAAAGTGAAGGAAATCAAGAATGGAAGACTTGCCATGTTTGCCATGCTTGGTTTCTACTTCCAAGCTTATGTCACAGGAGAAGGTCCTGTTGAGAACTTTGCAAAACATCTCAGTGACCCTTTTGGCAACAACTTGCTCACTGTCCTTGCTGGAAATGCTGAGAGGGCTCCAACTCTGTGAATCAAATTAATAAAATCAATAATCTCCATGTTCTTTCTCCAATCCTGAATGTACAATACAATCTCAATGAGACATTATCAAGGCATTTTGCTTTTATTTCTTGGAAGCCAACTCACTCTTGATTTTTAGTGCATGAATAGCTTGGCCCATGACTTGAACTTTGCATTCTTGAACTTCTTCCAATTTTCTGCTTCCAATTAAAGAAATTCATACCACAAAATCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01386	24007	27700	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009765 photosynthesis, light harvesting

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001386s00028376.1	PF00504.16	Chloroa_b-bind	92	253	5.10E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.071
SRR1783600	control	0.096
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.212
DRR006520	Root Summer glycyrrhizin high producing strain	0.274
DRR006521	Root Winter glycyrrhizin high producing strain	0.437
DRR006522	Root Winter glycyrrhizin high producing strain	0.426
DRR006523	Root Summer glycyrrhizin low producing strain	0.648
DRR006524	Root Summer glycyrrhizin low producing strain	0.650
DRR006525	Leaf Summer glycyrrhizin high producing strain	1525.556
DRR006526	Leaf Summer glycyrrhizin high producing strain	1523.786

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.896
SRR2868004	Drought Stress (root)	52.413
SRR2967015	Control (root)	13.997

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1577.019
SRR9715740	Leaf	1333.906
SRR9715741	Leaf	1327.778
SRR9715739	Root	0.485
SRR9715742	Root	2.693
SRR9715743	Root	2.409

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.388
SRR8749028	MeJA induced 9h	1.692
SRR8749029	MeJA induced 9h	1.826
SRR8749030	Uninduced	1.314
SRR8749031	Uninduced	0.367
SRR8749032	Uninduced	7.516

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.643
SRR8400027	Control - Root	4.709