Gene detail

Gene detail information of Glyur001386s00028374

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	5.00E-106	disease resistance protein (TIR-NBS-LRR class), putative
NR	AES76449.2	0	disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
COG	YP_007742.1	1.00E-12	hypothetical protein pc0743 [Candidatus Protochlamydia amoebophila UWE25]
Swissprot	tr\|O23530\|SNC1_ARATH	1.00E-116	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
trEMBL	tr\|G7KL60\|G7KL60_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:AES76449.2}

Sequence

Transcript Sequence

>Glyur001386s00028374.1
ATGGGGTGTGCAAGCAAAGGTCAGTTTCTATATGAAGCTCTAACAGAGGAAATCACAGAATTGACAGACAGTAACCTCTCTTCTCTTCCGCTGGCTGCTTCATCATCACCATCATCACCACCACCATACTCTTCTTCTGTCACCATGGATGGATTCACCTACGATGTGTTCCTCAGCTTCAGAGGAAAGGATACCCGCTACCATTTCACTAGCTTTCTTTGGAAAGCTCTCGAGGATAAGGGAATCCACACCTTCTTCGATAAGGAGGACATTCGAACAGGGGAGGAAATCACAAAAGCACTTCCCAAGGCAATTGAAGAGTCCAGGACGGCAATCGTTGTGCTCTCTCCCAATTATGCAGAGTCAGCCTTTTGCTTAAGAGAACTTTCCCATATCCTTGATTGTATACAGGGAAAGGGAAGGGGTCGGGTTGTTTGGCCAGTTTTTTATGAGGTGGAACCTTCTGATGTGAGATGGTCAACAGGGACCTATGGAAAAGCAATGGCTGCACATGAGGCGACCTCCCAGTGTACCCCGGTTGAGTTGCAAAACTGGAAGGACGCTCTGAAACAAGTGGCTGATTTGAAAGGAGATTGTTACCAATGGAAAAATGGGATTAACATATATCAATATGAGTTTATTGATAAGATCGTTAAAGAAGTCTCAAAACAGATTAAACCTTCTACTTTATTTGTTACTGATTACCCAGTTGGACTGAAACAAAAAAAAGAAGAGGTAATATCGCTTTTGAATGATGAGGAAGTCCACATGATAGGGATCCATGGACTTGGTGGCATAGGTAAAACAACACTTGCCAAAGAAGTTTATAATTTCATTGTCTCTAAATTCGAAGGTTCATGTTTTCTTGAAAATGTCAGAGAAAATTCAAAGAAACATGGGTTGACATCTCTCCAAAAGATCCTTCTTTCTAAAACAGTTGGAGAGAAGGAAATGAATATAACAAGTGTCCCTGAGGGAATCACAGTATTACAGCAGAGGCTCCGGCATAAGAAGATTCTTTTGCTTCTAGACGATGTTGACAACACGGAGCAATTAAACGCTATTATTGGTACTCCATCTGTCGCAACTGCTGGAAGACCGGAATGGTTTGGTCCTGGAAGTAGAGTCATCATCACAACACGGGACATAGGCTTGCTAAGAAGTCATGGGGTTGAAAACAAATATGAGGTGATGGGGTTGAACAAGAAAGATGCTCTTAAATTGCTTAGATGGAAAGCTTTCAAATCTGACGATGTTATTTCTGGTTATGATGGCGTTTTAAACCCGGTTCTAGAAGTGAGCTATAGAGCATTGAACAAAGAACAACAAAGTGCTTTTCTTGACATTGCTTGTTTTTTCAACGGGCATAAACTGGCATGGGTCAAAAAAATACTCCATGCTCATCATGGCAACAGAGCAGAAGGTCACATTGAAGTGTTAGTTGAAAAATCTCTCATAAAGATAAATGAGTCCAGTAATGTGACACTACATGATTTGATCGAGGACATGGGGAAAGAAATAGTCCAACGAGATCTACAGGAAGAGCCTGGAAGACGCAGTAGGTTATGGAATCGTAAAGATATTGTTTCAGTTTTACAAGATAATATGAATGAAGTAATTCGGGACTGGGATGAGAATGAAGTAAAGTGGGATGGAGAGGCTTTCAAAAGGACAAACAAACTCAGAATACTTATTATTCAAGGAGGAATTCATTTTTCCACAAGTCCCACATATCTTCCAAATAGTTTAACAGTGCTCAAATGGGATGGATATCCTTCAGAACATTTACCGCATGATTTTTATCCGAAGAAACTGGCCATATGCGAGTTATGGCGGAATAAACTTACATCTATTGGGAGGGGAGACTTATTCCAGAAGGCAAATAAGTTTGAGAATATGCGAGTTTTAAATTTAAACTACAGTTATCATTTAAAGGAAATACCCAATGTATCAGAACTTGATATTTCAGATTGTGAGAGTCTTGAGAGTTTTCCACCCGTGGTGGATGGGTTGCTGGATAAACTTAAAATCTTGCGTGCTACTAGTTGCGGGAAGCTCAAGAATTTTCCAGTACCCCTCAAGTTGGCCTCTCTTGAAGAACTTGATATTTCATCTTGTGATAGTCTTGAGAGTTTTCCACGCGTGGTGGATGGATTGCTGGATAAACTTAAAATCTTACGTGCTACTAGTTGCGGGAAGCTCAAGAATTTTCCAGTACCCCTCAAGTTGGCCTCTCTTGAAAAACTTTATATTTCATCTTGTGATAGTCTTGAGAGTTTTCCACCTGTGGTGGATGGGTTGCTGGATAAACTTAAAATCTTGTGTGCTACTAGTTGTGGGAAGCTCAAGAATTTTCCAGTATCCCTCAAGTTGGCCTTTCTTGAAGAACTTTATATTTCAGATTGTGATAGTCTTGAGAGTTTTCCACCCGTGCTAGATGGGTTGCTGGATAAACTTCAAATCTTGTGTGCTAATAAGTGCGGGAAGCTAAAGAATTTTCCAAGTTTTCCACTCGTGGTGGATGGGTTGCTTGATAAACTTCAAATCTTGTGTGCTAATAAGTGCGGGAAGCTAAAGAATTTTCCAGTACCCCTCAAGTTGGCCTCTCTTGAAAAACTTGATATTTCATCTTGTGATAGTCTTAAGAGTTTTCCACTCGTGGTGGATGGGTTGCTTGATAAACTTCAAATCTTGTGTGCTAATAAGTGCGGGAAGCTCAAGAATTTTCCAGTACCCCTCAAGTTGGCCTCTCTTGAAAAACTTGATATTTCATCTTGTGATAGTCTTGAGAGTTTTCCACCCGTGGTGGATGGGTTGCTGGATAAACTTAAAATCTTGTGTGCTACTAGTTGCGGGAAGCTCAAGAATTTTCCAGTACCCCTCAAGTTGGCCTCTCTTGAAGAACTTGATATTTCATCTTGTGATAGTCTTGAGAGTTTTCCACGCGTGGTGGATGGCTCAAGAATTTTCCAGTACCCCTCAAAGTTGGCCTCTCTTGAAAAACTTGATATTTCATGTTGTGATAATCTTGAGAGTTTTCCACCCGTGGTGGATGGGTTGCTTGATAAACTTCAAATCTTGTGTGCTAATAAGTGCGGGAAGCTCAAGAATTTTCCAAGTTTTCCACGCGTGGTGGATGGGTTGCTGGATAAACTTCAAATATTTTGTGCTAATAAGTGCAGGAAGCTCAAGAATTTTCCAGTACCCCTCAAGTTGGCCTCTCTTGAAAAACTTGAAATTTCATATTGTGATAGTCTTGAGAGTTTTCCAAAAATATTGGGAGAGATGGAAAATATAACACAACTTCAGTTGGAGGAAACTCCCATAAAAGAATTGCCGTTTTCATTTCGAAACTTCACTCGGCTTCGAAGACTATCTTTGAGTCGCTGTGGAATTACTCGGTTGCCAAGTAGCATTGTCATGATGTCAAAATTGATTGAGCTTTCCATTGAGGATGGGGAATGGCTATTCCAAAGACAAGACAAGGGTGAAGAGAAGGTGAGCCCAATGCAATCTTCACAAGTAGGACTTCTTCATCTCCGAAACTGCATCCTTTCAGACGAATCCTTGGCAATTGGTCTCAAGTGGTTTGCTAATGTGAAAGAATTAGACCTAAGTGGGAGTAAATTCACAACTCTTCCTGAATGCATCGAAAAATGTCAATTTTTATGGAAGCTTATCTTGAAAGACTGCAAGGAACTTCAGGAAATTAAAGGGATCCCGCCAAGCTTAAAATATTTATCTGCAGTGAACTGTGAATCTTTGACTTTGTCGAGTAAAAGCAAGTTACTGAATCGGGAACTACATGAGTCCGGAAACACTTGGTTTTGTTTTCCAGGTGCAGAGATTCCAGAGTGGTTTGACCACCAATGCATGCAACGACAATCATTTTCTTTCTGGTTTCGTAACAAGTTCCCTGCCATAGCTCTCTCTGTTGTTTCTGAGTTGACATGGGATAATTCCGAACCTCCTGTAACAGTAAAGATCAATGGCCCTGCTGGTGAATGTTTATGTGTGGATGTGGATTCCTATAATAATGTTAAGCCCCTGAAAACACCTCATTTACATCTTTTTCATATACAAACGAAAAATTTCTATCATCTTCTATACAAAGCACTTCTAGAAAATCAGTGGCATCGTGCAGAGGTTGATTTTGCATCCCAATTTCAGAAAAGGGGATTCCATTTATGGAAAGAGAAATGTAACATGGAAGATATTCGATTCACTAGTCCGGAGAATGATGTTAATACTGAGCTTGAAACTCAACTCTGA

Protein Sequence

>Glyur001386s00028374.1
MGCASKGQFLYEALTEEITELTDSNLSSLPLAASSSPSSPPPYSSSVTMDGFTYDVFLSFRGKDTRYHFTSFLWKALEDKGIHTFFDKEDIRTGEEITKALPKAIEESRTAIVVLSPNYAESAFCLRELSHILDCIQGKGRGRVVWPVFYEVEPSDVRWSTGTYGKAMAAHEATSQCTPVELQNWKDALKQVADLKGDCYQWKNGINIYQYEFIDKIVKEVSKQIKPSTLFVTDYPVGLKQKKEEVISLLNDEEVHMIGIHGLGGIGKTTLAKEVYNFIVSKFEGSCFLENVRENSKKHGLTSLQKILLSKTVGEKEMNITSVPEGITVLQQRLRHKKILLLLDDVDNTEQLNAIIGTPSVATAGRPEWFGPGSRVIITTRDIGLLRSHGVENKYEVMGLNKKDALKLLRWKAFKSDDVISGYDGVLNPVLEVSYRALNKEQQSAFLDIACFFNGHKLAWVKKILHAHHGNRAEGHIEVLVEKSLIKINESSNVTLHDLIEDMGKEIVQRDLQEEPGRRSRLWNRKDIVSVLQDNMNEVIRDWDENEVKWDGEAFKRTNKLRILIIQGGIHFSTSPTYLPNSLTVLKWDGYPSEHLPHDFYPKKLAICELWRNKLTSIGRGDLFQKANKFENMRVLNLNYSYHLKEIPNVSELDISDCESLESFPPVVDGLLDKLKILRATSCGKLKNFPVPLKLASLEELDISSCDSLESFPRVVDGLLDKLKILRATSCGKLKNFPVPLKLASLEKLYISSCDSLESFPPVVDGLLDKLKILCATSCGKLKNFPVSLKLAFLEELYISDCDSLESFPPVLDGLLDKLQILCANKCGKLKNFPSFPLVVDGLLDKLQILCANKCGKLKNFPVPLKLASLEKLDISSCDSLKSFPLVVDGLLDKLQILCANKCGKLKNFPVPLKLASLEKLDISSCDSLESFPPVVDGLLDKLKILCATSCGKLKNFPVPLKLASLEELDISSCDSLESFPRVVDGSRIFQYPSKLASLEKLDISCCDNLESFPPVVDGLLDKLQILCANKCGKLKNFPSFPRVVDGLLDKLQIFCANKCRKLKNFPVPLKLASLEKLEISYCDSLESFPKILGEMENITQLQLEETPIKELPFSFRNFTRLRRLSLSRCGITRLPSSIVMMSKLIELSIEDGEWLFQRQDKGEEKVSPMQSSQVGLLHLRNCILSDESLAIGLKWFANVKELDLSGSKFTTLPECIEKCQFLWKLILKDCKELQEIKGIPPSLKYLSAVNCESLTLSSKSKLLNRELHESGNTWFCFPGAEIPEWFDHQCMQRQSFSFWFRNKFPAIALSVVSELTWDNSEPPVTVKINGPAGECLCVDVDSYNNVKPLKTPHLHLFHIQTKNFYHLLYKALLENQWHRAEVDFASQFQKRGFHLWKEKCNMEDIRFTSPENDVNTELETQL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01386	10924	18338	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001386s00028374.1	PF01582.15	TIR	56	191	2.90E-31
Glyur001386s00028374.1	PF00931.17	NB-ARC	240	417	1.10E-24
Glyur001386s00028374.1	PF13306.1	LRR_5	853	975	0.028
Glyur001386s00028374.1	PF00560.28	LRR_1	998	1015	0.58
Glyur001386s00028374.1	PF13504.1	LRR_7	1120	1136	0.34
Glyur001386s00028374.1	PF13504.1	LRR_7	1199	1214	3.2

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.780
SRR1783600	control	1.889
SRR1783602	moderate drought stress	0.869
SRR1811619	moderate drought stress	0.736

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.738
DRR006520	Root Summer glycyrrhizin high producing strain	0.823
DRR006521	Root Winter glycyrrhizin high producing strain	0.062
DRR006522	Root Winter glycyrrhizin high producing strain	0.114
DRR006523	Root Summer glycyrrhizin low producing strain	1.652
DRR006524	Root Summer glycyrrhizin low producing strain	1.416
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.035
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.953

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.479
SRR2868004	Drought Stress (root)	5.798
SRR2967015	Control (root)	7.176

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.351
SRR9715740	Leaf	3.049
SRR9715741	Leaf	2.270
SRR9715739	Root	0.138
SRR9715742	Root	3.841
SRR9715743	Root	3.151

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.054
SRR8749028	MeJA induced 9h	0.253
SRR8749029	MeJA induced 9h	0.173
SRR8749030	Uninduced	0.048
SRR8749031	Uninduced	0.112
SRR8749032	Uninduced	0.093

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.107
SRR8400027	Control - Root	6.279