Gene detail information of Glyur001385s00038501 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08560.1 | 2.00E-59 | syntaxin of plants 111 |
| NR | XP_007151821.1 | 2.11E-87 | hypothetical protein PHAVU_004G077900g [Phaseolus vulgaris] |
| Swissprot | tr|Q42374|SY111_ARATH | 2.00E-72 | Syntaxin-related protein KNOLLE |
| trEMBL | tr|V7C3E5|V7C3E5_PHAVU | 8.00E-88 | Uncharacterized protein {ECO:0000313|EMBL:ESW23815.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01385 | 13559 | 15384 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001385s00038501.1 | PF05739.14 | SNARE | 99 | 161 | 2.00E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.322 |
| SRR1783600 | control | 7.842 |
| SRR1783602 | moderate drought stress | 5.343 |
| SRR1811619 | moderate drought stress | 5.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.255 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.738 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.095 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.186 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.788 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.297 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.472 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 41.976 |
| SRR2868004 | Drought Stress (root) | 15.325 |
| SRR2967015 | Control (root) | 22.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.520 |
| SRR9715740 | Leaf | 2.122 |
| SRR9715741 | Leaf | 2.255 |
| SRR9715739 | Root | 0.706 |
| SRR9715742 | Root | 2.493 |
| SRR9715743 | Root | 2.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.919 |
| SRR8749028 | MeJA induced 9h | 5.385 |
| SRR8749029 | MeJA induced 9h | 6.961 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.820 |
| SRR8400027 | Control - Root | 20.966 |