Gene detail information of Glyur001384s00028578 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G03800.1 | 5.00E-06 | D-aminoacyl-tRNA deacylases |
| NR | AFK42057.1 | 3.28E-07 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9ZPQ3|GEK1_ARATH | 1.00E-06 | D-aminoacyl-tRNA deacylase |
| trEMBL | tr|I3SP65|I3SP65_LOTJA | 1.00E-07 | Uncharacterized protein {ECO:0000313|EMBL:AFK42057.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01384 | 61333 | 63526 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001384s00028578.1 | PF04414.7 | tRNA_deacylase | 32 | 75 | 4.30E-07 |
| Glyur001384s00028578.2 | PF04414.7 | tRNA_deacylase | 32 | 75 | 2.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.132 |
| SRR1783600 | control | 0.192 |
| SRR1783602 | moderate drought stress | 0.120 |
| SRR1811619 | moderate drought stress | 0.317 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.484 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.540 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.202 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.262 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.169 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.656 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.933 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.976 |
| SRR2868004 | Drought Stress (root) | 39.318 |
| SRR2967015 | Control (root) | 43.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.036 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.885 |
| SRR8749028 | MeJA induced 9h | 38.305 |
| SRR8749029 | MeJA induced 9h | 21.524 |
| SRR8749030 | Uninduced | 27.107 |
| SRR8749031 | Uninduced | 20.855 |
| SRR8749032 | Uninduced | 16.772 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.577 |
| SRR8400027 | Control - Root | 0.450 |