Gene detail information of Glyur001384s00028576 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20190.1 | 4.00E-113 | expansin 11 |
| NR | XP_007136114.1 | 3.48E-169 | hypothetical protein PHAVU_009G019000g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LNU3|EXP11_ARATH | 2.00E-142 | Expansin-A11 (Precursor) |
| trEMBL | tr|V7AU17|V7AU17_PHAVU | 1.00E-169 | Uncharacterized protein {ECO:0000313|EMBL:ESW08108.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01384 | 52228 | 53457 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001384s00028576.1 | PF03330.13 | DPBB_1 | 65 | 152 | 2.40E-23 |
| Glyur001384s00028576.1 | PF01357.16 | Pollen_allerg_1 | 164 | 241 | 6.80E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.005 |
| SRR1783602 | moderate drought stress | 0.243 |
| SRR1811619 | moderate drought stress | 0.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 74.544 |
| SRR2868004 | Drought Stress (root) | 31.109 |
| SRR2967015 | Control (root) | 28.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.293 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.170 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.289 |
| SRR9715743 | Root | 0.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.086 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.835 |
| SRR8400027 | Control - Root | 1.668 |