Gene detail information of Glyur001384s00028572 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20180.1 | 2.00E-58 | Protein of unknown function (DUF677) |
| NR | XP_003549471.2 | 5.25E-144 | PREDICTED: UPF0496 protein At1g20180-like [Glycine max] |
| Swissprot | tr|Q6DYE5|U496K_ARATH | 1.00E-79 | UPF0496 protein At1g20180 |
| trEMBL | tr|I1MY53|I1MY53_SOYBN | 2.00E-144 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G37970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01384 | 37975 | 39099 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001384s00028572.1 | PF05055.7 | DUF677 | 52 | 369 | 4.00E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.030 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.118 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.193 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.331 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.235 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.526 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.390 |
| SRR2868004 | Drought Stress (root) | 1.633 |
| SRR2967015 | Control (root) | 0.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.794 |
| SRR9715740 | Leaf | 1.811 |
| SRR9715741 | Leaf | 2.593 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.380 |
| SRR9715743 | Root | 0.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.144 |
| SRR8749028 | MeJA induced 9h | 42.332 |
| SRR8749029 | MeJA induced 9h | 19.316 |
| SRR8749030 | Uninduced | 10.954 |
| SRR8749031 | Uninduced | 15.004 |
| SRR8749032 | Uninduced | 8.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.430 |
| SRR8400027 | Control - Root | 0.463 |