Gene detail

Gene detail information of Glyur001382s00031055

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G08110.1	0	nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases
NR	XP_006582030.1	0	PREDICTED: putative ATP-dependent helicase HRQ1-like isoform X1 [Glycine max]
COG	YP_181690.1	4.00E-151	DEAD/DEAH box helicase [Dehalococcoides ethenogenes 195]
trEMBL	tr\|K7KW92\|K7KW92_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G22745.4}

Sequence

Transcript Sequence

>Glyur001382s00031055.1
TAGAAAGCGAACGAGCGCGGAACCAACTCTCACCCAAGTCGCAAGGACAACACAGCAATGGCAGCAGAGAGCAGCGAGAAGGTTGAAATCCAAATCCGAACCCTAACCGGTGAATCCACCACTCTCCCCATCACTCCCACCGCAACCGTCCAACACCTCAAGCTCCTCCTCCACCACTCATTCCCTCCCGCCACCAACTCCCCCAATTTCCACCTCTTCTTCAAGGGTGACAAATTGAAACTGCAGGCTCAGATTGGTTCTTACCCTATCCATGGCGGCGAGTTTCTCGTCTTGGTTCCATTTGCAAAGAAGGAATCGTCATCGTTCAACGCTTCTTCGAATGTTACTCCTCCTCCCACTCCCAGTGCTTCAACCTCTAGTAATCTCGCCGATGCCACGTGGTCCAACATAATGGAAGATTTGTCGCACTTACGCGACACCACCACCACCGAAAGTGGCGGCGACAGTTATGCAACTAACTTCGAGCAACAAGGGACATCTGAGAAAGGGGGTTTAGGTTCTAATGAGAAGCAGATAGAGCTTCCGTATCATCACATATTGAACACACTGGAATTTACTAGCGAGGGTGCTCTTGGAGAGAATAGTTGTGAGGCCTTTTCGAAGGTTTTGGAGTCTGTAAATTGTTTATCTGATTTGTCTCTTGGACACTGCAAGTTGCTTAAAAGGGCGTGTTTGAAGGGAGCTCGTGTGAATGATGGTGGTGGTGTTAGTATTACTTGCTTGTGTCCACCGTGGTTGAAGATTGTTGTGAAGGCGTTTACTTTTGTGAACATTTTCTCCGCGGGTCTTCATTTGCAGCGTAGGAATACAACCATTTGTTTACTGGAAGAAGCACTCGATCGNCTTGCCAAGTTTGGAGTCAAACTTGGCCTACATGACATGAAGCATCTTTCCCTTCTCTGTCCTCATCTAGTATGTTTTGTAGATGACATAGAGAAGGCGAGTTTTGGTGATGTCATTGTTGTCATTAATAGTTCAACTGGCAATAAAGATCAAAGTGAAGATAATCCTAAAAGAGCTCGCAAGTGGTTGTATGTTTCAAAGATTGTCAGTACATTGAAGAGAAGGGACCGCTCTTTCCGAAAAAATCTGGGGTGGGCTTTTGAGCAGCTGCCGTTTGAAATTGGAGATGGGATGAACGTGGGAATTTCCTTGGAAGAACTGTTTGAAGCAGTCAAGGACCATGTTTTTGTTGGAAAAGAAAACAAATCAAAACGTGTAAAGAGAAGCTCAACTACCCCAAGACCTGACATGGACCACATTGGGTGTCATGACACACAGTCGTTAATGGCTGTGGACATGGTCGAGCATCTTAAGAAAGGAATTGGATACGAAGGACAGATTGTGCATATTGAAGACATATGTGCCAGAAAAGCCATTTACAGTGAGATCCCAATTGAACTATCAGAGAAAATGAGATCTGCACTGAAGTGTATTGGAGTTTCTGAATTGTATAGTCACCAGGCAGAGTCTATACAAGCCTCCCTTCATGGGAAGAATGTTGTTGTGGCTACAATGACATCTAGTGGCAAATCTCTTTGCTATAACCTGCCAGTTCTAGAAGTGTTGTTTAAGAATTCATCATCATGTGCTTTGTACATATTTCCCACAAAGGCATTAGCTCAAGATCAACTAAGATCTTTGTTATACATGACAAAAGGATGTGATGTTGACTTAAATATTGGTATATATGATGGTGACACTTCTCATAGTGAGAGGACATGGCTACGTGATAATTCTAGACTGCTGATCACAAATCCAGATATGTTACACATATCAATCTTGCCCCACCATCGGCGATTTGGTCGGATTTTATCAAATCTAAGGTTTGTGGTAATTGATGAAACTCATACATACAAGGGAGCATTTGGATGTCATACTGCCGTTATTTTAAGGAGGCTCAGGAGACTCTGCTCACACGTATACGGAGCTGTTCCTTCTTTTATTTTTTCTACTGCAACTTCTGCAAATCCTTGTGAGCATTCTATGGAACTTGCAAATTTACCCACACTGGAGCTATTTCAGAATGATGGAAGTCCATCCGCAAGGAAACTTTTCATCCTTTGGAATCCTGTTTTGCGTCCAAAATCTATCTTGAAGAAAGCTCAGTTTGCTATGAATAATGATGAGTTGGCAGATGAAAGTACTAATTTTGTTCGTTCAAGCCCAATTGTGGATGTTTCACGCCTTTTTGCAGAGATGGTTCAGCATGGTCTTCGCTGCATTGCATTTTGTAAATCACGGAANCTTTGCGAGCTTGTTTTATCCTATACACGTGAGATTCTTCATGAGACAGCTCCACATCTAGTGGATTCCATATGTGCATATCGTGGTGGCTACATTGCAGAGTTGGGCATTGATGTTGGAGAAATTGATGTCACTCTGCATCTAGGATTTCCTGGTAGTATTTCAAGCTTGTGGCAACAAGCTGGTAGGGGTGGGAGGAGAGATAGACCATCTCTTGCTGTTTACGTTGCATTTGGTGGGCCACTTGATCAATACTTCATGAAAAATCCTAAAAAACTTTTTGAAAGACCAATTGAATGCTGTCATATTGATTCCCAAAACAAGCAGGTTCTTGAACAGCATTTGGTCTGTGCAGCTCATGAACACCCTTTGAGTGTGCAGTATGATGAGCAGTATTTTGGTGCTTGCTTAGAAAATGTTTTAATTTCTCTAAAAGCTAGAGGATACTTGAGTTCTGATCTATCATCTGTTTCTTCTAGAATATGGAACTACATTGGTCCTGAGAAATTACCTTCACGAGCAGTCAATATTCGAGCAATAGAAACTGTTAGATACAGTGTCATAGATAAGAAAAAAAACAAAGTCCTTGAAGAGATAGAGGAAAGCAAGGCTTTCTTTCAGGTATATGAAGGTGCGGTGTACATGTGCCAGGGGAAAACCTATTTGGTTGAAAAATTAGATCTGTCTACCAAAACTGCTTTCTGCAAAGAGGCTGATCTGAAGTATTATACAAAGACTCGAGATTACACTGATATTGATGTCATTGGTGGTAATATTGCTTATCCAGTAATGGTTTCCTCCATGTTTCCAAAAACAAATGCCCGTGCTCATGTATGCAAAGTGACAACTACTTGGTTTGGATTTTATCGTATTTGGAGAGGAAGTAATCAAATCTTTGATACTGTTGATCTAGCACTTCCTCAATATTCATACGAGTCACAGGCAGTTTGGATTCCAGTGCCGCAGTCAATAAAAGAAGCAGTGGTCAAGCAAAATTATGATTTCCGTGGAGGTTTGCATGCTGCTTCTCATGCTGTTTTACACACGGTGCCTTTACATATAACGTGCAACTTATCTGACTTGGCTCCTGAATGTCCAAATCCTCATGATAGCCGATATTACCCTGAAAGAATTCTAATATATGATCAACATCCTGGAGGGTCTGGAATTTCAGTACAGGTTCAACCCCTTTTCACAAAGTTCCTGGCAGCTGCACTGGAACTTCTCACATGCTGCTGCTGTTCGGCGGAAGTAGGTTGCCCTAATTGTGTTCAGAGCTTTGCTTGCCATGAATATAACGAGGTTTTACACAAGGATGCGGCGATTATGATCATCAAGGGTATTCTAGATGCAGAGNACTAGTGTACTTCAAGGAATGTGCTGGCTTCTGAAGTCTATATAGGGGAAATAATTTTTTTTCTTCGAAGTGAGCGAATAAGGTATCCGCTCTTAAATTTTATTAAGATCAAGAGAAACTTTAAG

Protein Sequence

>Glyur001382s00031055.1
MAAESSEKVEIQIRTLTGESTTLPITPTATVQHLKLLLHHSFPPATNSPNFHLFFKGDKLKLQAQIGSYPIHGGEFLVLVPFAKKESSSFNASSNVTPPPTPSASTSSNLADATWSNIMEDLSHLRDTTTTESGGDSYATNFEQQGTSEKGGLGSNEKQIELPYHHILNTLEFTSEGALGENSCEAFSKVLESVNCLSDLSLGHCKLLKRACLKGARVNDGGGVSITCLCPPWLKIVVKAFTFVNIFSAGLHLQRRNTTICLLEEALDRLAKFGVKLGLHDMKHLSLLCPHLVCFVDDIEKASFGDVIVVINSSTGNKDQSEDNPKRARKWLYVSKIVSTLKRRDRSFRKNLGWAFEQLPFEIGDGMNVGISLEELFEAVKDHVFVGKENKSKRVKRSSTTPRPDMDHIGCHDTQSLMAVDMVEHLKKGIGYEGQIVHIEDICARKAIYSEIPIELSEKMRSALKCIGVSELYSHQAESIQASLHGKNVVVATMTSSGKSLCYNLPVLEVLFKNSSSCALYIFPTKALAQDQLRSLLYMTKGCDVDLNIGIYDGDTSHSERTWLRDNSRLLITNPDMLHISILPHHRRFGRILSNLRFVVIDETHTYKGAFGCHTAVILRRLRRLCSHVYGAVPSFIFSTATSANPCEHSMELANLPTLELFQNDGSPSARKLFILWNPVLRPKSILKKAQFAMNNDELADESTNFVRSSPIVDVSRLFAEMVQHGLRCIAFCKSRXLCELVLSYTREILHETAPHLVDSICAYRGGYIAELGIDVGEIDVTLHLGFPGSISSLWQQAGRGGRRDRPSLAVYVAFGGPLDQYFMKNPKKLFERPIECCHIDSQNKQVLEQHLVCAAHEHPLSVQYDEQYFGACLENVLISLKARGYLSSDLSSVSSRIWNYIGPEKLPSRAVNIRAIETVRYSVIDKKKNKVLEEIEESKAFFQVYEGAVYMCQGKTYLVEKLDLSTKTAFCKEADLKYYTKTRDYTDIDVIGGNIAYPVMVSSMFPKTNARAHVCKVTTTWFGFYRIWRGSNQIFDTVDLALPQYSYESQAVWIPVPQSIKEAVVKQNYDFRGGLHAASHAVLHTVPLHITCNLSDLAPECPNPHDSRYYPERILIYDQHPGGSGISVQVQPLFTKFLAAALELLTCCCCSAEVGCPNCVQSFACHEYNEVLHKDAAIMIIKGILDAEX

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01382	58853	73982	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001382s00031055.1	PF00270.24	DEAD	474	643	1.40E-23
Glyur001382s00031055.1	PF00271.26	Helicase_C	769	803	0.00075
Glyur001382s00031055.1	PF09369.5	DUF1998	1078	1161	1.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.667
SRR1783600	control	5.692
SRR1783602	moderate drought stress	6.808
SRR1811619	moderate drought stress	6.764

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.786
DRR006520	Root Summer glycyrrhizin high producing strain	6.637
DRR006521	Root Winter glycyrrhizin high producing strain	5.932
DRR006522	Root Winter glycyrrhizin high producing strain	5.785
DRR006523	Root Summer glycyrrhizin low producing strain	7.719
DRR006524	Root Summer glycyrrhizin low producing strain	7.323
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.193
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.011

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.594
SRR2868004	Drought Stress (root)	9.551
SRR2967015	Control (root)	8.128

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.508
SRR9715740	Leaf	6.902
SRR9715741	Leaf	5.627
SRR9715739	Root	0.989
SRR9715742	Root	4.910
SRR9715743	Root	4.810

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.411
SRR8749028	MeJA induced 9h	11.174
SRR8749029	MeJA induced 9h	5.420
SRR8749030	Uninduced	2.388
SRR8749031	Uninduced	0.817
SRR8749032	Uninduced	1.134

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.836
SRR8400027	Control - Root	13.685