Gene detail

Gene detail information of Glyur001382s00031052

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18580.1	0	galacturonosyltransferase 11
NR	KEH32050.1	0	CAZy family GT8 glycosyltransferase [Medicago truncatula]
COG	YP_007080337.1	2.00E-06	LPS:glycosyltransferase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q949Q1\|GAUTB_ARATH	0	Probable galacturonosyltransferase 11
trEMBL	tr\|A0A072V1Q3\|A0A072V1Q3_MEDTR	0	CAZy family GT8 glycosyltransferase {ECO:0000313\|EMBL:KEH32050.1}

Sequence

Transcript Sequence

>Glyur001382s00031052.1
CTCGTTTTCATTTGTCGGCCTCATTATTCTCTACTCCATTTTACTGTCACTACATCATCACCAATCCATTTGCACTATTTTCCTTCTTGCTCTCACCTTCTCCACAAGTAATGAACGCTCCCAACTCAGTTTCCGAATTCTGATATAGCCATTAGCCTCAATAGTGCATGTTACAGTGAGTGAGTGAGTGAAAAGCCATTCTTTTATGGCTATTTGATCCAATTCGAAACATGGGTCGGTCTCTATTCTCGATTTAACGGTGAGTGAGTTGGTGGACGGAGGAGCCGGCGAAATATGCGGCGGCGGGCTGCCGAGTTCCGGCGCCCGGTTCGGCGGAGGATCTCTCGTTGGATCTGCTTGCTCCTTGGCGCCTTCTCTCTCGCGGGTTTGGTTATGTTCCTCGTGCAACACTATCACCGTGAAGATCGGGTCCAATACCCCGTTCCGGAGAGAAATACAAAAGTTGAACATATTGCTAAGGAGAGTTTGAATTTCACTCAAGAAATTTTAAGTGCAACATCCTTTTCGCGGCAATTAGCAGAGCAGATGGTTCTGGCCAAGGCTTATGTGATTATTGCCAAAGAGCACAATAATCTTCACCTAGCCTGGGAGCTTAGCTCAAAGATTAGGGATTGCCAGTTTTTGCTTTCGAAAGCTGCGATGACCGGGGAGNCTGTCACCCAAGAGGAAGCCGAGCCAATCATAAAAAGCCTGTCAACTCTAATTTTCAAGGCACAAGATGTCCATTATGACATTGCAACCACCATAGTTACAATGAAATCACATATTCAAGCTCTTGAAGAGCGTGCCAACGCAGCAACAGTTCAAAGCACTGTATTTGCTCAAATATCAGCTGAAGCACTACCGAAGAGTCTTCATTGCTTAAATGTGAAACTTACAGCCGATTGGCTAAAGACTCCTTCCCTGCGAGAACTCTCAGACGAGAGGAGAAACTCCCTCCGGCTCATGGATCACAATCTATATCATTTCTGCATCTTTTCGGATAATGTACTGGCAACATCTGTAGTTGTTAACTCCACAGTCTTCAACGCCGACCATCCAAAACTGTTGGTCTTTCATATCGTCACCGATGCTGTCAACTATGGAGCAATGCAAGCATGGTTCCTCACTAATGACTTCAAAGGGGCCACCATAGAGGTGCAGAATGTTGAGGAGTTTCAATGGCTGAATGAATCTTATTCTCCAATTGTCAAACAGCTACTCAATCCCGAATCAAGAGCCTTCTATTTCGGGGCATATCAAGATGTAAACGTTGTTGAACCGAAGTTGCGGAACCCCAAGTATCTGTCATTACTAAATCATCTCCGGTTTTACATCCCCGAGATTTATCCCCAACTTGAGAAGGTGGTTTTCCTTGACGACGATGTTGTTGTCCAGAAGGACCTAACCCCGCTTTTCTCACTTGATTTGCATGGAAACGTGAACGGTGCAGTCGAAACCTGTCTCGAAGCGTTCCATCGGTACTACAAGTATCTCAACTTCTCAAACTCAATAATAAGCTCAAAGTTTGACCCACAGGCATGTGGATGGGCATTTGGCATGAATGTTTTCGACTTGATCAAGTGGAGGAAAGCAAATGTGACCGCAAGATATCACTATTGGCAGGAGCAGAATGCGGATGGGACACTGTGGAANCTCGGTACACTTCCTCCTGCTCTTATGAGTTTTTATGGTTTGACAGAACCACTTGACAGAAGATGGCATGTTTTAGGATTGGGTTATGACTTAAATGTCGATAATCGTCTCATTGAAAGTGCAGCAGTTATTCACTATAATGGGAACATGAAACCATGGCTCAAGTTAGCTATAGGCAGGTATAAGCCACTATGGCACAAGTACATAAATCATAGTAACCCTCATGTACAAGATTGTGCCATAGGTTAAAAAATGCACTACTTCTTGATTGCTTATGGATTATGCAATCATAGATTATTTTAAACACTTGATCTGTGATTGCATTTGCCATTAATATAAGAGTCAGAAGTAGAAATTTTTTGACTTTGCTAGAAATTTTGTTTTTCTTTCCTTTTACCCCTTTTATACTGCAATCACAGTCTCCTTGAAATAGGAAAGAATGATTTCTTATATACACACTAGAAAGTTTAAATGCGTTAGGTGAAGAGATGTGGGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01382	43649	47616	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13648	GAUT	EC:2.4.1.43	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0016757 transferase activity, transferring glycosyl groups

GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001382s00031052.1	PF01501.15	Glyco_transf_8	239	510	3.70E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.344
SRR1783600	control	7.467
SRR1783602	moderate drought stress	4.226
SRR1811619	moderate drought stress	4.200

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.803
DRR006520	Root Summer glycyrrhizin high producing strain	11.629
DRR006521	Root Winter glycyrrhizin high producing strain	3.145
DRR006522	Root Winter glycyrrhizin high producing strain	3.079
DRR006523	Root Summer glycyrrhizin low producing strain	15.585
DRR006524	Root Summer glycyrrhizin low producing strain	15.618
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.818
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.807

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.158
SRR2868004	Drought Stress (root)	3.529
SRR2967015	Control (root)	4.389

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.468
SRR9715740	Leaf	0.604
SRR9715741	Leaf	2.642
SRR9715739	Root	6.015
SRR9715742	Root	13.129
SRR9715743	Root	12.296

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.299
SRR8749028	MeJA induced 9h	13.112
SRR8749029	MeJA induced 9h	9.913
SRR8749030	Uninduced	6.377
SRR8749031	Uninduced	1.623
SRR8749032	Uninduced	1.817

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.868
SRR8400027	Control - Root	5.300