Gene detail information of Glyur001379s00029170 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G27200.1 | 2.00E-45 | Cupredoxin superfamily protein |
| NR | AFK46705.1 | 1.02E-79 | unknown [Lotus japonicus] |
| Swissprot | tr|Q41001|BCP_PEA | 1.00E-21 | Blue copper protein (Precursor) |
| trEMBL | tr|I3T2G3|I3T2G3_LOTJA | 4.00E-80 | Uncharacterized protein {ECO:0000313|EMBL:AFK46705.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01379 | 55658 | 57100 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001379s00029170.1 | PF02298.12 | Cu_bind_like | 36 | 114 | 6.90E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.296 |
| SRR1783600 | control | 0.302 |
| SRR1783602 | moderate drought stress | 0.947 |
| SRR1811619 | moderate drought stress | 1.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.872 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.566 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.807 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.615 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.400 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.342 |
| SRR2868004 | Drought Stress (root) | 17.378 |
| SRR2967015 | Control (root) | 17.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.971 |
| SRR9715740 | Leaf | 0.313 |
| SRR9715741 | Leaf | 1.231 |
| SRR9715739 | Root | 0.366 |
| SRR9715742 | Root | 18.020 |
| SRR9715743 | Root | 11.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.080 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.143 |
| SRR8400027 | Control - Root | 9.943 |