Gene detail

Gene detail information of Glyur001379s00029168

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14180.1	6.00E-144	Myzus persicae-induced lipase 1
NR	XP_003547652.1	0	PREDICTED: triacylglycerol lipase 2-like [Glycine max]
COG	YP_006440644.1	5.00E-17	alpha/beta hydrolase fold containing protein [Turneriella parva DSM 21527]
Swissprot	tr\|Q67ZU1\|LIP2_ARATH	4.00E-178	Triacylglycerol lipase 2 (Precursor)
trEMBL	tr\|I1MLJ1\|I1MLJ1_SOYBN	0	Lipase {ECO:0000256\|PIRNR:PIRNR000862}

Sequence

Transcript Sequence

>Glyur001379s00029168.1
GGAAAATATGGCATCAAAACCAAACTCGCTTTCCCATTCTGTATATCCCTCTTTTTTGTAGCTTTTTTGATTTCACACTCTTCTCTTGTACACACACATTGACACATATATAAAAGGAATGCTCCTCCTCGTCCTCCTCTTCAATCCCAATTAAACATTCAATTGATCAAAACTAGCTAGCTCAATCTGATAGAGACACCAACATGGCTCTTCTGGGCATGACACTACTCTGTTTTCTCTTAGTCTCAACAACTCTGCCTTATCATCAAGCACAAGCTTCAATCCGTGGCTTCTTTGGAAGAAAACATGTTGATGANAGTTACCCTCCAATGGAGGGCATATGCGACTCTTCTGTCATTCTTCATGGATACAAATGCCAAGAACTTGAGGTTACAACCAAAGACGGGTACATTCTGAGCTTGCAAAGGATACCAGAAGGTCGAGGTGAAGTTAGAAGCGACGGGACAAAGAAACAACCTGTGATAATACAGCATGGAGTACTAGTGGATGGGATGACATGGCTTCTGAACACTCCAGAGCAGGACCTGCCTCTGATTCTAGCAGATAAGGGCTTCGATGTGTGGATTGCTAACACCAGAGGAACCAGATATAGCCGCCGACATGTCTCATTGGACCCCTCTAGCCCGGACTTTTGGGATTGGTCTTGGGACGAATTGGTTTCCTATGATCTACCTGCTGTGTTTGATTATGTGTTCAGCCAAACAGGGCAGAAGATTAATTACGTTGGCCATTCTCTGGGGACTTTGATAGCTTTGGCTTCCTTCTCAGAAGGGAAATTGGTTAACCAGCTAAAATCAGCAGCCTTGTTGAGCCCCATTGCCTATTTGAGCCACATGAACACTGCACTTGGAGTTGTTGCAGCCAAGTCCTTTATTGGTGAGATCACTACACTATTTGGTCTGGCAGAATTTAATCCCAGAGGGTTACCTGTTGAAGCCTTTCTCAAGTCTCTTTGTGCTTACCCTGGGATAGACTGCTATGACTTGTTGACTGCAATAACTGGTCTAAGTGAAAACTGCTGCCTTAATTCTTCAACTGTTCATCTGTTCTTGATAAATGAACCCCAGTCAACATCAACAAAGAACATGGTACACTTGTCTCAGAAATACAACATCATGCACTATGGAGAAGCATCACCTCCAATCTACAACCTTTCCAACATACCCCATGACCTCCCTCTCTTCATTAGTTATGGTGGACAAGATGCACTTTCTGATGTCCGTGACGTTGAGAATTTGCTCGATAGTCTCAAGTTACATGATGTGGATAAGCTAAGTGTTCAATTCATCAAGGACTATGCTCATGCTGATTACATTATGGGGTTCAATGCCAAGGACATTGTGTATAGTGCTGTTCTTTCATTTTTCAATCGTCAAGCCAACACTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01379	47417	54262	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001379s00029168.1	PF04083.11	Abhydro_lipase	53	110	9.20E-16
Glyur001379s00029168.1	PF00561.15	Abhydrolase_1	124	353	6.00E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.554
SRR1783600	control	12.905
SRR1783602	moderate drought stress	3.785
SRR1811619	moderate drought stress	3.882

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.929
DRR006520	Root Summer glycyrrhizin high producing strain	15.723
DRR006521	Root Winter glycyrrhizin high producing strain	0.237
DRR006522	Root Winter glycyrrhizin high producing strain	0.231
DRR006523	Root Summer glycyrrhizin low producing strain	23.926
DRR006524	Root Summer glycyrrhizin low producing strain	23.677
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.735
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.663

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.088
SRR2868004	Drought Stress (root)	9.144
SRR2967015	Control (root)	9.425

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.215
SRR9715740	Leaf	1.610
SRR9715741	Leaf	3.790
SRR9715739	Root	1.136
SRR9715742	Root	7.482
SRR9715743	Root	5.538

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.361
SRR8749028	MeJA induced 9h	1.652
SRR8749029	MeJA induced 9h	6.360
SRR8749030	Uninduced	0.221
SRR8749031	Uninduced	0.356
SRR8749032	Uninduced	0.077

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.401
SRR8400027	Control - Root	13.184