Gene detail

Gene detail information of Glyur001379s00029162

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G27170.1	0	chloride channel B
NR	KEH22046.1	0	ClC chloride channel family protein [Medicago truncatula]
COG	YP_007130715.1	9.00E-26	Cl- channel voltage-gated family protein [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|P92942\|CLCB_ARATH	0	Chloride channel protein CLC-b
trEMBL	tr\|A0A072TXX8\|A0A072TXX8_MEDTR	0	Chloride channel protein {ECO:0000256\|RuleBase:RU361221}

Sequence

Transcript Sequence

>Glyur001379s00029162.1
ATGGGAGAGGGTTCTATGAACCTTGGAGAAAGTACAACAACAAACAACAAAATGGAAGAAGAAGAAGAAGTGGTTGATAGAGAAGAAGAGATAGACCCAGAAATCAACAATCCACTAAATCGGCCACTTCTTAAGAGGAACAGGACACTATCTTCAAATCCACTTGCCCTTGTTGGAGCAAAAGTTTCCTACATAGAAAGCTTGGATTATGAGATAAATGAGAATGATCTATTCAAGCATGGGTGGAGAAGCAGATCAAGAGTTGAGATATTGCAATACATATTCTTGAAATGGTTATTGGCATTCCTTGTTGGATTTCTCACTGGTGTTATAGCNACTCTCATCAATCTNGCTGTTGAGAACATTGCTGGGTACTTGACGGGTTTCCTATATTTCACGGGCATTAATTTCATTTTAACATTTGTTGCTGCTGTTCTGTGTGTGTGTTTTGCACCCACAGCAGCTGGACCTGGAATACCTGAAATCAAAGCTTATCTTAATGGCGTCGATACTCCCAACATGTACGGTGCTACAACATTGATAGTTAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGCCTAGATCTGGGGAAAGAAGGACCCTTGGTACATATAGGCAGCTGCATTGCTTCCTTACTNGGCCAAGGAGGCCCTGACAATTACCGGATCAAATGGCGCTGGCTTCGATATTTCAACAACGACCGCGACNGCCGGGATCTCATTACCTGTGGTGCATCTTCAGGAGTTTGTGCAGCTTTTCGAGCCCCAGTGGGCGGAGTTCTCTTTGCCCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTCCTATGGAGAACTTTCTTTTGCACAGCTGTGGTGGTGGTAGTGCTAAGGGCCTTCATTGAAATCTGCAACTCCGGGAAATGCGGCCTTTTCGGTGCGGGAGGNCTGATCATGTTTGACGTGAGCAATGTCACTGTTAGGTACCATGCGATGGATATCATCCCTGTTGTAGTCATTGGAATCATAGGCGGTCTTGCAGTAGTACTATTCACGTCAGCGTGTCAATATGGTCTCCCATTCCTAGCAAAATGCACCCCTTGTGATTCATTGCTTCCAGAGTCAGAGTCTGCTTGCCCCAGCAATGGAAGGTCTGGAAATTTCAAACAATTCAATTGCCCACCTGGCTACTACAATGATCTTGCTACTCTGCTGCTTACCACTAATGATGATGCCGTTAAAAACATATTCTCAACCAACACTCCTCATGAATATCAGCCCTCCTCCCTCCTAATTTTCTTTGCACTATATTGCATATTAGGAATAATTACTTTTGGAATTGCTGTGCCATCTGGGCTCTTCCTCCCAATCATCCTTATGGGCTCAGCTTATGGCCGCCTTCTTGGCATCTTCATGGGACCTCATACAAAGATTGACCAAGGGTTGTTTGCAGTACTTGGTGCAGCCTCCCTTATGGCTGGTTCCATGAGGATGACTGTATCCCTTTGTGTAATCTTCCTTGAACTCACCAGCAATCTTCTCCTACTACCAATAACAATGATTGTTCTCCTCATAGCCAAAACTGTTGGAGACTGCTTCAACCCAAGCATCTATGAGATTATCCTGCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAGCCATGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTAAAGCCAGCAGTGATTTCCCTCCATGGAATAGAAAAGGTAGCCAATATAGTAGATGTCTTGAAAAACACTACACATAATGGTTTCCCTGTGATGGATGATGGGGTAGTACCACCAGTAGGACAGGCCACTGGGGCAACAGAACTGCATGGAATAATTCTAAGAGCACACCTCGTCCAAGCATTAAAGAAGAAGTGGTTCTTGAAAGAGAGAAGAAGAACGGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGGGGTATTGAAGAGGTGGCTATAACAAGGGAGGAAATGGAGATGTTTGTTGATCTACACCCTCTCACCAATACAACTCCCTTTACAGTGCTGGAGAGTATGTCAGTGGCAAAAGCATTGGTCCTCTTCAGGCAAGTTGGACTTCGTCATCTGCTGGTAGTACCCAAGTATCAAGCATCTGGGGTATCCCCTGTAATTGGGATTTTGACCAGACAGGATTTACTAGCCCACAACATTCTGACAGTCTTTCCTCACCTGAAAAAATCTAAGGGCAGAGAGAAGAGAAATTGAAGATTTCCTAGTCATTCAATGGCCAGCCACTTTCTTGGGACAAGTTGGTTTTTAATTCCATCAAAGTTATTCCTCAGTTTTTTATTACTTGAATCAAAGGCATGGAGATGGATATGATACAAAAGCGATGAAAAAGTATATCCATTACATTTTTTCTACACAATTTATCAAATGATGAAACAAATTCCCTTTTCCCACTGGTACAAAACATCATCCCCCCCCCCCCCCCCAAAAAAAAAACGAAAAAGAAAATGGCAATGGCAATGGCAACTTTTTCCCCCACTTGAGACTGCTACTAAATTTATCCATTTCTTTTCTTCCGTTCATAATTATACATTGATTTGCAGGTGTAAAGGAAACCCCCTGTACTTAATCATGTGCTCATTGATGTCTAGCAGCTCCTTGCAAGTGTTTTTTCTTTTTCTTTCCTGGTTTCTTTTTCTGAGGGCCCCTCTTGAACACNGCTAGAACTTCAATGCTGCAAACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01379	10167	15550	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006821 chloride transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005247 voltage-gated chloride channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001379s00029162.1	PF00654.15	Voltage_CLC	139	525	6.00E-76
Glyur001379s00029162.1	PF00571.23	CBS	557	625	5.20E-05
Glyur001379s00029162.1	PF00571.23	CBS	679	730	2.60E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.666
SRR1783600	control	0.632
SRR1783602	moderate drought stress	3.385
SRR1811619	moderate drought stress	3.333

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.862
DRR006520	Root Summer glycyrrhizin high producing strain	3.117
DRR006521	Root Winter glycyrrhizin high producing strain	1.227
DRR006522	Root Winter glycyrrhizin high producing strain	1.051
DRR006523	Root Summer glycyrrhizin low producing strain	2.267
DRR006524	Root Summer glycyrrhizin low producing strain	2.018
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.585
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.488

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.742
SRR2868004	Drought Stress (root)	4.909
SRR2967015	Control (root)	4.378

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.472
SRR9715740	Leaf	1.683
SRR9715741	Leaf	0.961
SRR9715739	Root	0.948
SRR9715742	Root	1.189
SRR9715743	Root	1.284

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.563
SRR8749028	MeJA induced 9h	3.990
SRR8749029	MeJA induced 9h	4.994
SRR8749030	Uninduced	1.979
SRR8749031	Uninduced	0.836
SRR8749032	Uninduced	1.143

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.057
SRR8400027	Control - Root	3.335