Gene detail information of Glyur001378s00038403 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61110.1 | 9.00E-45 | ribosomal protein S27 |
| NR | XP_007161552.1 | 5.02E-57 | hypothetical protein PHAVU_001G079100g [Phaseolus vulgaris] |
| COG | NP_147228.1 | 2.00E-08 | 30S ribosomal protein S27 [Aeropyrum pernix K1] |
| Swissprot | tr|Q9M2F1|RS272_ARATH | 2.00E-57 | 40S ribosomal protein S27-2 |
| trEMBL | tr|V7CXB1|V7CXB1_PHAVU | 2.00E-57 | 40S ribosomal protein S27 {ECO:0000256|RuleBase:RU000671} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01378 | 57315 | 58512 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001378s00038403.1 | PF01667.12 | Ribosomal_S27e | 30 | 84 | 1.40E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 67.797 |
| SRR1783600 | control | 68.230 |
| SRR1783602 | moderate drought stress | 61.982 |
| SRR1811619 | moderate drought stress | 61.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 87.101 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 85.558 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 42.314 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 41.890 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 86.573 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 86.404 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.276 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 182.532 |
| SRR2868004 | Drought Stress (root) | 110.432 |
| SRR2967015 | Control (root) | 111.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 79.142 |
| SRR9715740 | Leaf | 83.231 |
| SRR9715741 | Leaf | 81.539 |
| SRR9715739 | Root | 118.173 |
| SRR9715742 | Root | 76.810 |
| SRR9715743 | Root | 84.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 274.702 |
| SRR8749028 | MeJA induced 9h | 77.618 |
| SRR8749029 | MeJA induced 9h | 170.962 |
| SRR8749030 | Uninduced | 25.843 |
| SRR8749031 | Uninduced | 34.246 |
| SRR8749032 | Uninduced | 45.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 145.104 |
| SRR8400027 | Control - Root | 141.957 |