Gene detail

Gene detail information of Glyur001378s00038400

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20350.1	1.00E-113	Ankyrin repeat family protein with DHHC zinc finger domain
NR	XP_004508416.1	3.10E-172	PREDICTED: S-acyltransferase TIP1-like [Cicer arietinum]
Swissprot	tr\|Q52T38\|ZDH22_ARATH	2.00E-141	Protein S-acyltransferase 24
trEMBL	tr\|V7CCR6\|V7CCR6_PHAVU	3.00E-171	S-acyltransferase {ECO:0000256\|RuleBase:RU079119}

Sequence

Transcript Sequence

>Glyur001378s00038400.1
ATGACCTGTTTTGTGGCAACAACGTTGGAAAATAAGGTTTGGACGGCGACGTGTGGGTTGCACTCGCTGGAAAGGGGCCACAACTGCCTGGGCGTGGCTGCTTACAAAGGTTTTGCCGATTGTATACGTCTTNTGTTGGTTCTTGATGCACATAGGGGACGTCAGGATGAAGAGGGTTACACTCCTCTTCATTGGGCTGTTATAAGTGGTAACTTGAAGGCCTGTACTGTGTTAGTAAAGGGTGGCAAAAAGGAAGACTTGATGGTGACTGACAATAACTGGCCTTACTCCAACACAGCTTGCTTCTGCTATGAACCGCACACAAGTTGCCCATTTCCTTGTAGCTTGACGAGCACACTGGATGATTCACTTGTAGCTTGGTGCACAAATTTTGTGCTATTGGTCACCTATATTCGATCAGTCATTATGGCAAAAAATATGCCGAAGCTGACAGCTACAACTGGCCTTCTTGCACGGTTTGGAGTGTTACTTGCAACTGCTGGATCGGTGATGTTTTACCGGTGTAGCAACAAGGACCCAGGTATTATCAAAATGAATGNGCATGACACTCAGAATATGATAGATGATAAGCCTATTTTGAAGATTGAGATAAATAACCCTGCTTTGCTAGACGAAAATTGGTCCAAGCTTTGTACAACATGCAAGATTGTTAAGCCTCGTCGTACGAAACACTGTTCTACCTGTGATTGTTGTGTGGAACAATTTGACCATCACTGTACTTTTTTAAACAATTGCGTTGGCAAGAACAACATATGGGATTTCGCTCTTTTTCTTGTTCTCGAAGCTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAAGACTATTAACTAATCCACTTGCTCCTTCTTCATTTGGGGCATGGATTCGTTATGTTGGTAAAAACCATGTTGGAGCAATATCATTTCTAATTGCTGATTTTTTCCTCCTCTTATTTGTGTTTACTTTCACAGTTGTTCACGTTTGGCTGATATCACACAATCTTACAACAAAGGAATGGCTCAACGACAGTCGGTATAGCTACCTCAGAGGTCCGGATGGTAGATTCAGAAATCCGTATGATCATGGCATCAAGAAGAACTGTTCTGATTTCTGGATCAAAGGATACAATGAAGATGTGGAGTGTATTGAAGAATTACGTCACTTAGAGGAGGGCAATGGGAAATGGCCATGTTGTTAGTAATAATGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01378	26923	39242	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001378s00038400.1	PF12796.2	Ank_2	22	83	1.90E-07
Glyur001378s00038400.1	PF01529.15	zf-DHHC	170	344	3.40E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.673
SRR1783600	control	0.657
SRR1783602	moderate drought stress	1.127
SRR1811619	moderate drought stress	0.838

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.718
DRR006520	Root Summer glycyrrhizin high producing strain	1.374
DRR006521	Root Winter glycyrrhizin high producing strain	0.476
DRR006522	Root Winter glycyrrhizin high producing strain	0.197
DRR006523	Root Summer glycyrrhizin low producing strain	0.218
DRR006524	Root Summer glycyrrhizin low producing strain	0.413
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.077
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.010

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.198
SRR2868004	Drought Stress (root)	1.044
SRR2967015	Control (root)	1.785

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.053
SRR9715740	Leaf	0.061
SRR9715741	Leaf	0.226
SRR9715739	Root	0.000
SRR9715742	Root	0.285
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.904
SRR8749028	MeJA induced 9h	6.367
SRR8749029	MeJA induced 9h	2.728
SRR8749030	Uninduced	4.093
SRR8749031	Uninduced	4.483
SRR8749032	Uninduced	1.866

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.090
SRR8400027	Control - Root	1.763