Gene detail

Gene detail information of Glyur001377s00038210.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72330.3	2.00E-34	alanine aminotransferase 2
NR	AFK36743.1	8.47E-48	unknown [Lotus japonicus]
COG	YP_001820615.1	5.00E-09	class I and II aminotransferase [Opitutus terrae PB90-1]
Swissprot	tr\|Q9LDV4\|ALAT2_ARATH	3.00E-45	Alanine aminotransferase 2, mitochondrial (Precursor)
trEMBL	tr\|I3S901\|I3S901_LOTJA	3.00E-48	Uncharacterized protein {ECO:0000313\|EMBL:AFK36743.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01377	59880	63317	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00814	GPT, ALT	EC:2.6.1.2	Carbon metabolism	map01200
			2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Carbon fixation in photosynthetic organisms	map00710
			Alanine, aspartate and glutamate metabolism	map00250
			Arginine biosynthesis	map00220

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001377s00038210.1	PF00155.16	Aminotran_1_2	119	200	0.00021

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	8.218
SRR1783600	control	7.360
SRR1783602	moderate drought stress	8.508
SRR1811619	moderate drought stress	9.244

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.316
DRR006520	Root Summer glycyrrhizin high producing strain	13.884
DRR006521	Root Winter glycyrrhizin high producing strain	14.423
DRR006522	Root Winter glycyrrhizin high producing strain	13.501
DRR006523	Root Summer glycyrrhizin low producing strain	23.649
DRR006524	Root Summer glycyrrhizin low producing strain	22.626
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.317
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.340

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.136
SRR2868004	Drought Stress (root)	26.679
SRR2967015	Control (root)	27.742

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.450
SRR9715740	Leaf	21.239
SRR9715741	Leaf	20.330
SRR9715739	Root	8.594
SRR9715742	Root	14.044
SRR9715743	Root	10.495

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.098
SRR8749028	MeJA induced 9h	10.785
SRR8749029	MeJA induced 9h	5.203
SRR8749030	Uninduced	5.690
SRR8749031	Uninduced	4.131
SRR8749032	Uninduced	4.476

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.459
SRR8400027	Control - Root	34.662