Gene detail information of Glyur001377s00038209 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05670.2 | 2.00E-156 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| NR | XP_007153868.1 | 0 | hypothetical protein PHAVU_003G071600g [Phaseolus vulgaris] |
| Swissprot | tr|Q0WVK7|PPR12_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g05670, mitochondrial (Precursor) |
| trEMBL | tr|K7L9Q0|K7L9Q0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G40580.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01377 | 57182 | 59506 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001377s00038209.1 | PF13041.1 | PPR_2 | 283 | 323 | 5.30E-08 |
| Glyur001377s00038209.1 | PF13041.1 | PPR_2 | 356 | 401 | 7.80E-13 |
| Glyur001377s00038209.1 | PF13041.1 | PPR_2 | 424 | 473 | 2.20E-18 |
| Glyur001377s00038209.1 | PF13041.1 | PPR_2 | 494 | 542 | 4.80E-14 |
| Glyur001377s00038209.1 | PF13041.1 | PPR_2 | 564 | 613 | 4.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.173 |
| SRR1783600 | control | 10.132 |
| SRR1783602 | moderate drought stress | 8.882 |
| SRR1811619 | moderate drought stress | 8.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.680 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.404 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.942 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.749 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.421 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.643 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.651 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.672 |
| SRR2868004 | Drought Stress (root) | 27.607 |
| SRR2967015 | Control (root) | 29.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.648 |
| SRR9715740 | Leaf | 7.681 |
| SRR9715741 | Leaf | 10.495 |
| SRR9715739 | Root | 3.509 |
| SRR9715742 | Root | 7.302 |
| SRR9715743 | Root | 6.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.099 |
| SRR8749028 | MeJA induced 9h | 12.540 |
| SRR8749029 | MeJA induced 9h | 5.390 |
| SRR8749030 | Uninduced | 4.032 |
| SRR8749031 | Uninduced | 6.549 |
| SRR8749032 | Uninduced | 2.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.941 |
| SRR8400027 | Control - Root | 28.008 |