Gene detail information of Glyur001377s00038208 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10360.1 | 1.00E-57 | glutathione S-transferase TAU 18 |
| NR | XP_003628561.1 | 5.38E-113 | Glutathione S-transferase [Medicago truncatula] |
| COG | YP_001868965.1 | 4.00E-14 | glutathione S-transferase domain-containing protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q9FUS9|GSTUI_ARATH | 6.00E-71 | Glutathione S-transferase U18 |
| trEMBL | tr|G7LDS9|G7LDS9_MEDTR | 2.00E-113 | Glutathione S-transferase, amino-terminal domain protein {ECO:0000313|EMBL:AET03037.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01377 | 51221 | 52330 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001377s00038208.1 | PF13417.1 | GST_N_3 | 15 | 55 | 1.10E-07 |
| Glyur001377s00038208.1 | PF00043.20 | GST_C | 75 | 178 | 4.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.100 |
| SRR1783600 | control | 0.999 |
| SRR1783602 | moderate drought stress | 0.072 |
| SRR1811619 | moderate drought stress | 0.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.421 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.347 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.371 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.086 |
| SRR2868004 | Drought Stress (root) | 19.307 |
| SRR2967015 | Control (root) | 7.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.403 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.215 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.456 |
| SRR9715743 | Root | 0.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.212 |
| SRR8749029 | MeJA induced 9h | 0.096 |
| SRR8749030 | Uninduced | 0.964 |
| SRR8749031 | Uninduced | 0.578 |
| SRR8749032 | Uninduced | 0.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.838 |
| SRR8400027 | Control - Root | 4.003 |