Gene detail

Gene detail information of Glyur001377s00038205.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05670.2	3.00E-70	Pentatricopeptide repeat (PPR-like) superfamily protein
NR	XP_004512317.1	2.16E-125	PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q0WVK7\|PPR12_ARATH	2.00E-97	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial (Precursor)
trEMBL	tr\|G7LAK1\|G7LAK1_MEDTR	5.00E-121	PPR containing plant-like protein {ECO:0000313\|EMBL:AET05409.2}

Sequence

Transcript Sequence

>Glyur001377s00038205.1
ATGAAGAGACCATCCATCTCCTCCTATTATCTCCCTATTTTCCACCACCATCCCCTTCCCAAATGTTGGAGCCCCAAGTTCTCTTCTTCTTCTTCTTCTCCACCTCCTTCGGGTTCGGGTTCGAGTTCGGATTCAACAACCACTCCTCCCCCGCGGCCTTTCCCTGANTACTCCCCTCGAAAGCCTTCCATCTTAGATGCCGACCTCGTCNGCCACGTGTCCTCCACCCTCAAACAACGCCGTTCTGAGCCCCTCCGCAACGTCCTCAAGCCCTACGAGTCTCGCTTCAAGCCACACCACCACCTCATCATCTGGGTCCTCATGGACATCAAAACCGACTACCGGCTCATCCTGGATTTCTTCAACTGGTCACGCTCACGTTCCAGGGGTGACTCACTCCCACCCTTGGAAGCACTCTGCATCGTCGTTCACATCGCCGACGCATCAAAAGACCTCAAAACGGCACAGAAACTCGTCTCTGAGTTCTTCTCTAAAGCCCGTTTCGATGTTAACCACTCTTTTACCCGTTTCACCGATAACCTCATATACACTTACAAGCACTTGGGTTCTCACCCCGTTGTGCTGTCTTGTTGTGGTTTCGACGGGATGAAGACAGCGATTCGGGTGTTCGNAGAGTATCCGGAATCCAGTGTTCGTTGGAACACCGTGTCGTATAATGTGGTTCTTCATTGTCTTTGTCGATTGGGTAAAGTAAAGGAAGCACATAACCTGCTTGTACAAATGGAGCATAGGGGAAGTTTTCCTGATGTTGTGATTAGTGGGTATTGTCAAATTGGGGAGCTAGAGAAGGTGTTGAAGGTGGTTGAAGAGTTAAGGAGAAAGGGATTGAAACTGAATGAATACGTTTACAATGACATAATTGTGATTCTTTGTAGGAATGGTGAGGTGGTTGAGGCGGAGCAAGTGTTGAGGGAGAAGGCAAAGCACGGGGTTTCGCCTGACAATCTGGTGTATACAACGCTCATTAGTGGTTTCTGTAAGTATGGGAATGTTTCNGCCGTGCGCAAGATGTTCGACGAAATGAGGCGTAGGGGAGTTGTTCTGGATTTCGTGACGGGCATTGTAAAGCTAGAAATATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01377	28889	30869	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001377s00038205.1	PF13041.1	PPR_2	221	258	7.70E-09
Glyur001377s00038205.1	PF13041.1	PPR_2	288	334	1.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.165
SRR1783600	control	0.157
SRR1783602	moderate drought stress	0.159
SRR1811619	moderate drought stress	0.063

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.327
DRR006520	Root Summer glycyrrhizin high producing strain	0.298
DRR006521	Root Winter glycyrrhizin high producing strain	0.100
DRR006522	Root Winter glycyrrhizin high producing strain	0.238
DRR006523	Root Summer glycyrrhizin low producing strain	0.210
DRR006524	Root Summer glycyrrhizin low producing strain	0.131
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.074
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.132

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.306
SRR2868004	Drought Stress (root)	0.290
SRR2967015	Control (root)	0.297

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.015
SRR9715740	Leaf	0.144
SRR9715741	Leaf	0.061
SRR9715739	Root	0.004
SRR9715742	Root	0.000
SRR9715743	Root	0.146

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.057
SRR8749028	MeJA induced 9h	0.073
SRR8749029	MeJA induced 9h	0.037
SRR8749030	Uninduced	0.067
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.048

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.310
SRR8400027	Control - Root	0.152