Gene detail

Gene detail information of Glyur001376s00030053

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51480.1	0	glutamate receptor 3.6
NR	XP_004509455.1	0	PREDICTED: glutamate receptor 3.6-like isoform X1 [Cicer arietinum]
COG	YP_007161539.1	3.00E-24	amino acid ABC transporter substrate-binding protein [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q84W41\|GLR36_ARATH	0	Glutamate receptor 3.6 (Precursor)
trEMBL	tr\|G7L8P7\|G7L8P7_MEDTR	0	Glutamate receptor {ECO:0000256\|PIRNR:PIRNR037090}

Sequence

Transcript Sequence

>Glyur001376s00030053.1
ATGTATCAGATGAATGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTGATAGCAATTTTCATTGATGATGATCATGGAAGAAATGGGGTAACTGCACTAGGGGATAAGCTAGCAGAGAAACGTTGTAAAATATCATATAAAGCAGCCTTAAGGCCAGATAATAACATTAGCCATGAAGAAATAAGCAGTACATTAGCTAAGCTAGCTTTAATGGAGTCTAGGGTAATAGTCCTTCATATATTCTCTACTATTGATTCAAAAATCAAAAGAAACTTTGTTTCTAGGTGGAACAACCTGAGCCATAAAATGGATCCTAATCAGGGCCCTTTTGGGTTAAACACTTTNGGTCTATATGNCTATGACACNGTTTGGGTTCTTGCTTATGCACTTGATGCATTATTAAGCAATGGAGGAACCTTGTCATTTTCAAATGATTCAAGCCTAAACATGTTAANGGGGGACACCCTTCATCTAGATACTATGGGGGTCTTTGTTAATGGTAGCATGTTGCTTCAAAAAATCTTAGAGGTCAACAGAACAGGTTTAACAGGCCGATTGATGTTTGATTCGGATGGAAATTTGATGCACCCATCATATGAAATCATTAATACACCTTTGGCCTCCGCACTGGGGAATCTCCTAATCAGTAATCATTCCAATTCCAACGAGGGACTTTATGGTGTCATCTGGCCTGGTCAAACAACTCAAACCCCACGTGGTTGGGTTTTTGCCAGCAATGGAAGACACTTGNGAATTGGGGTGCCACTTAGAATTGGTCACCGTGAATTTGTGTCAAAAATTGAAGGCTCTGAAATGTTTAGCGGTTATTGCATAGATGTGTTTATAGCAGCACTGAACTTGTTGCCTTATCCGGTTCCATTCAAGCTTATCCCATTTAATGATGGTAAAACAAACCAATTGAATTCAGATCTTCTCCTCGTGACAGCTGGTGCCTTTGATGCTGTGGTGGGGGACATTACCATAACCACAAACCGAACTAAGATAGTGGATTTTACACAACCATATATTGAGTCTGGGCTAGTTGTTGTGGCACCTATCAGGAAGTTGAAATCCAGCCCTTGGGCTTTCCTCAGACCTTTCACTCCAATGATGTGGCTTGTCACAGGAATGTTTTTCTTGGTTGTGGGAGTTGTTGTGTGGATTTTAGAGCGTCGCCAAAATGATGACTTTAGAGGTCCTGCTAGGAGACAGTTTGTCACCATTATCTGGTACTCAAGTTCCAAAACAATTTTAAAATATGGTTTAGCTTTTCAACCTTGTTTTTTGCACATAATAAAAAAAAAATCCTTCTATGCAGGAGAGAAAACTGTCAGCACCCTTGGTNGCTTAGTGCTAATCATATGGCTTTTTGTGGTTTTGATACTCAACTCAAGCTATATTGCAAGCCTGACCTCCATCCTTACNGTGGAACAACTCTCTTCCTCAGTTAAGGGAATTGAAAGCTTAGCAACAAGCAATGATCGCATTGAATATGACAAAGCCTTAAAGGATGGACCAACTAATGGTGGTGTTGCTGCAATAATAGATGAACGTGCATACATGGAGCTCTTCCTAGCAACTAGATGTGAATATGGTATTGTTGGTCAAGAGTTCACCAAGATGGGATGGGGCTTTAATGGAGACCTCCAGAGAATTCATGACAAATGGCTAACCAGAAGTGCTTGTAGCTCAGAAGGTGCAAGGCAAGGCATAGCCCGACTTGAGCTAAAAAGCTTTTGGGGTTTGTTCCTTCTTATTGGCATAGCATGCTTCGTTGCTCTCCTTTGCTACGTTATTCGAATGGCCTACANCTTTAGTAAGTACTCCAATTCCAGTAACAATAATAACCTTGGAGGCTCATCATCACGCTCTGCTCGTCTTCGATCATTCNTTTCCTTTGTCAATGAAATAGAAGAGGAGGACAAATACAGGCCAAAGAGAAGGCAAAAGGAAAAGTGCTCTTGTAGTAAGGTGGCACATAAAGGTGGATCNTTGGATGGCTTAAGTGTTGGTGTCCATATTGAAAATGAATCAAATGATGCCACTGCACAAGGTTTCCAAAATCCTAATCATCCTACTACACTGCTTCTGATTTTGCTTCCCTCTCTGACAACTGCAACCATGATTAGAATCTGGCTTGTGGTGTGGATGGCTCTCTCCAATTTGTTCTCTTCAACTGGGGCTGGCTTGGATAATTCCACAACAGTGCCTGCTTTTGTAAATATTGGGGTTCTCTACTCTTTCAATACCAGTGTTGGTAGAATTGTAAAAATTGCTGTAGAAGCTGCAGTCGAAGATGTAAATTCGGATCCGTCTATTCTTGGTAAAACTAAGTTGAAGGTCTCACTTCAAGAAGATTCAAAATACAGAGGTTTTTTGAGCATTGCTGAGGCCTTGCAGCTCATGGCGAAACAAACTGTGGCCATAATCGGCCCGCAGACCTCTACAACNGCTCATGTCATATCTCATATAGCAAATGAGCTCCAAGTTCCTCTGCTATCATTTTCAGCCACTGATCCTACCCTTTCCTCGCTTCAATTCCCATTCTTTGTTAGAACAGCTTTTAGTGACATTTATCAAATGACTGCAATAGCAGACCTTGTTAACCACTTTGAGTGGAGAGAGGTTATCGCAGTCTACGGTGACGATGACCATGGGAGGAATGGAATCNGCGCATTAGGGGATAAGCTNGCTGAGAGACGTTGCAAGATCTCATTTAAAGCACCAATGGCTCCTGAGGCAACTAGGGAGGAGATTACTGATGTGCTTGTTCAGGTGGCCCTGGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGTCCAAAAGTGTTGAGTGTGGCAAAGTCTCTTGGAATGATGGAAAATGGGTATGTCTGGATCGCCACCAATTTTCTCTCCAGTTATCTGGACATTGAAAGTCCCTACTCTTCAGATGCAATGGATAATATTCAAGGAGTTATTACATTAAGAATGTACATACCAGATTCAAAGCTCAAAAGACAGTTCGTTTCTAGATGGACAAACTTGACTAGTGGAAAGACTGCAAATGGTTCCCTTGGTTTGAGTACTTATGGTATCTTTGCATATGATACTGTNTATGTGCTTGCTCGTGCCCTTGATGCATTTTTCAAACGAGGGAACAGAATTACATTTTCACACGATCCAAAGTTATCCGAACTACATGGAGACAACATGCATCTTGATGCTGTGAAAATCTTCAATGAAGGAAATCTGTTGTGTGAAAGTATTTATGAGGTTAACATGACTGGTGTNTCAGGTCCATTCAGGTATACACCCGATGGAAACCTTGCTAATCCAGCATATGAAATCATCAATGTGATTGGAACCGGGACTCGGAGGATCGGCTATTGGTCTAATTACTCTGGATTATCGATTGTTCCTCCAGAAACACTTTATTCAAAACCGCCGAATCGTTCCAGTGCAAGTCAAAAGCTACTCACTGTGTTTTGGCCAGGAGAGACAACCCAGAAGCCTCGCGGTTGGGTTTTTCCAAACAATGGAAGGATGTTAAAAATTGGGGTACCAAAAAGGGTACAATCCACCGACATGTTCAAGGGATTCTGCATTGATGTGTTTCTTTCTGCAGTAAACTTGTTGCCCTATGCTGTCCCTTATAAATTTATTTCATATGGTGATGGTCACAGCAATCCTAGTAACACCGAGCTTGTGCGTCTGATCACTGCGGGTGTCTTTGATGCTGCAGTAGGTGACATTACAATTACTACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTCGTAGCACCGGTTAAGAAGATGGAATCCAATGCTTGGGCATTTTTNACCCCATTTACACCAATGATGTGGACTGTCACAGCTATCTTTTTCCTACTAGTGGGAGCCGTTGTTTGGGTTTTAGAGCATAGACTGAATGATGATTTTAGGGGACCTCCTAAAAAACAAGTAGTCACAATTTTGTGGTTTAGTTTTTCAACAATGTTCTTTGCTCACAGGGAAAATACAGTGAGCACTCTCGGTCGATTTGTGCTGCTTATATGGCTATTTGTAGTTCTAATAATCAACTCGAGTTACACGGCAAGCCTGACTTCAATCCTCACAGTGCAACAACTTTCTTCACCTATCAAAGGCATTGAGAGCTTANTAAATAGCAAAGATCCTATTGGCTACATGCAGGGTTCTTTTACCAGAACTTATTTAATTGAGGAAATTGGCATTGATGAATCCAGACTAGTTCCTCTAAGAACACCGGAAGAAACTACGAAAGCACTGGAGAAAGGTCCCAAAAAGGGTGGTGTTGCTGCATACATTGACGAACGTGCTTACATAGAGCTTTTCCTTTCAAGCCGATGTGATTTTACTGTTGTAGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCACCAGACTCACCATTAGCAGTTGACCTGTCAACTGCCATTTTGGAGTTGGCAGAAAATGGAGACTTGCAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCTTGTCTGTCACAAGGTGCAAAGCTTGAAGTGGACAGGCTCAACCTCAAAAGCTTTTGGGGCCTCTATCTAGTCTGTGGTTTGGCATGCTTGGTTGCTCTCCTGATATATCTTGTTCAGACCCTGAAGCAGTACAAGAAGCACCACCATCCAGAGGAACCTGAGCCTTCTGGCCAAGGCTCAGGTTCTTCGCGTCTGAGGACTTTTCTTTCATTTGTGGATGAAAAGGAAGAGATAGTTAAGAGCCGCTCTAAGAGAAGGCAAATGGAGAGGATATCATACAGAAGCACAAGTGAGGTTGGATCATCNATCATCTCCTCCAATAAAGATTATTCTCAGCCTCAGCCATCCTTAAACAGAATTGATTCAGCTAATGAAGTCTGACTAAACTGTTGCCTATTTATTTGCTCCACATAACATGATTTTGTAGCCTCTTGTGCCAACCACTTCAGCATCACTCTTCAATTTTATTCCCTATTGAAGTGCTGGATTCCTACTACATTTTCTCTTTCTTCTTCGGTACATATATTTGTAGGACGAGGAGTGCTANCAATACATTTTCTAACACTTTTTATAATACACTCTATGATTAGATGAAATTCATGTGGCTCCTATATTTTTTTAATGTGGTCCATTCCCAAAATAATAAAACCCACATGAATTTCAACAAATCAAAGGGAATGTGTTGAAAATACTGTGTTAGAAAGTGTATTACTAACATTTTTTTTGTAAGATATATCAACTTGTCTCTCACTGTAATGTACGAGTGGGGGACAAGGTGCCTTCTCCAATTTTTGTTCCTACTTTTAGTTTATGTAGAATACAACGAAATCATCTCATTGTTATTTAAAATGCAGCAGACCAATTGGTGACTTCCATACTCTTGGATTGTTGCACAA

Protein Sequence

>Glyur001376s00030053.1
MYQMNAVAEIVDHFQWRDVIAIFIDDDHGRNGVTALGDKLAEKRCKISYKAALRPDNNISHEEISSTLAKLALMESRVIVLHIFSTIDSKIKRNFVSRWNNLSHKMDPNQGPFGLNTXGLYXYDTVWVLAYALDALLSNGGTLSFSNDSSLNMLXGDTLHLDTMGVFVNGSMLLQKILEVNRTGLTGRLMFDSDGNLMHPSYEIINTPLASALGNLLISNHSNSNEGLYGVIWPGQTTQTPRGWVFASNGRHLXIGVPLRIGHREFVSKIEGSEMFSGYCIDVFIAALNLLPYPVPFKLIPFNDGKTNQLNSDLLLVTAGAFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKLKSSPWAFLRPFTPMMWLVTGMFFLVVGVVVWILERRQNDDFRGPARRQFVTIIWYSSSKTILKYGLAFQPCFLHIIKKKSFYAGEKTVSTLGXLVLIIWLFVVLILNSSYIASLTSILTVEQLSSSVKGIESLATSNDRIEYDKALKDGPTNGGVAAIIDERAYMELFLATRCEYGIVGQEFTKMGWGFNGDLQRIHDKWLTRSACSSEGARQGIARLELKSFWGLFLLIGIACFVALLCYVIRMAYXFSKYSNSSNNNNLGGSSSRSARLRSFXSFVNEIEEEDKYRPKRRQKEKCSCSKVAHKGGSLDGLSVGVHIENESNDATAQGFQNPNHPTTLLLILLPSLTTATMIRIWLVVWMALSNLFSSTGAGLDNSTTVPAFVNIGVLYSFNTSVGRIVKIAVEAAVEDVNSDPSILGKTKLKVSLQEDSKYRGFLSIAEALQLMAKQTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFVRTAFSDIYQMTAIADLVNHFEWREVIAVYGDDDHGRNGIXALGDKLAERRCKISFKAPMAPEATREEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMENGYVWIATNFLSSYLDIESPYSSDAMDNIQGVITLRMYIPDSKLKRQFVSRWTNLTSGKTANGSLGLSTYGIFAYDTVYVLARALDAFFKRGNRITFSHDPKLSELHGDNMHLDAVKIFNEGNLLCESIYEVNMTGVSGPFRYTPDGNLANPAYEIINVIGTGTRRIGYWSNYSGLSIVPPETLYSKPPNRSSASQKLLTVFWPGETTQKPRGWVFPNNGRMLKIGVPKRVQSTDMFKGFCIDVFLSAVNLLPYAVPYKFISYGDGHSNPSNTELVRLITAGVFDAAVGDITITTERTKMVDFTQPYIESGLVVVAPVKKMESNAWAFXTPFTPMMWTVTAIFFLLVGAVVWVLEHRLNDDFRGPPKKQVVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLXNSKDPIGYMQGSFTRTYLIEEIGIDESRLVPLRTPEETTKALEKGPKKGGVAAYIDERAYIELFLSSRCDFTVVGQEFTRNGWGFAFPPDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLNLKSFWGLYLVCGLACLVALLIYLVQTLKQYKKHHHPEEPEPSGQGSGSSRLRTFLSFVDEKEEIVKSRSKRRQMERISYRSTSEVGSSIISSNKDYSQPQPSLNRIDSANEV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01376	12500	26577	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0004970 ionotropic glutamate receptor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001376s00030053.1	PF01094.23	ANF_receptor	2	83	3.80E-11
Glyur001376s00030053.1	PF01094.23	ANF_receptor	88	207	1.90E-15
Glyur001376s00030053.1	PF00497.15	SBP_bac_3	315	357	9.00E-08
Glyur001376s00030053.1	PF00060.21	Lig_chan	374	593	1.10E-23
Glyur001376s00030053.1	PF01094.23	ANF_receptor	760	1119	1.30E-72
Glyur001376s00030053.1	PF00497.15	SBP_bac_3	1231	1514	3.80E-21
Glyur001376s00030053.1	PF00060.21	Lig_chan	1296	1547	3.90E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.216
SRR1783600	control	6.361
SRR1783602	moderate drought stress	6.745
SRR1811619	moderate drought stress	6.698

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.685
DRR006520	Root Summer glycyrrhizin high producing strain	10.587
DRR006521	Root Winter glycyrrhizin high producing strain	2.106
DRR006522	Root Winter glycyrrhizin high producing strain	2.016
DRR006523	Root Summer glycyrrhizin low producing strain	10.794
DRR006524	Root Summer glycyrrhizin low producing strain	10.582
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.594
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.578

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.797
SRR2868004	Drought Stress (root)	11.302
SRR2967015	Control (root)	15.928

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.927
SRR9715740	Leaf	0.633
SRR9715741	Leaf	0.827
SRR9715739	Root	4.019
SRR9715742	Root	5.731
SRR9715743	Root	6.157

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.123
SRR8749028	MeJA induced 9h	4.806
SRR8749029	MeJA induced 9h	2.231
SRR8749030	Uninduced	1.449
SRR8749031	Uninduced	0.506
SRR8749032	Uninduced	0.686

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.681
SRR8400027	Control - Root	9.623