Gene detail information of Glyur001375s00028624 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13800.2 | 5.00E-34 | pheophytinase |
| NR | ACU17406.1 | 4.20E-65 | unknown [Glycine max] |
| COG | YP_007124821.1 | 2.00E-08 | alpha/beta hydrolase [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q9FFZ1|PPH_ARATH | 2.00E-39 | Pheophytinase, chloroplastic (Precursor) |
| trEMBL | tr|C6T6H4|C6T6H4_SOYBN | 2.00E-65 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU17406.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01375 | 73055 | 74033 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.026 |
| SRR1783600 | control | 0.796 |
| SRR1783602 | moderate drought stress | 1.088 |
| SRR1811619 | moderate drought stress | 0.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.263 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.544 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.421 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.384 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.825 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.831 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.503 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.490 |
| SRR2868004 | Drought Stress (root) | 0.713 |
| SRR2967015 | Control (root) | 1.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.589 |
| SRR9715740 | Leaf | 17.762 |
| SRR9715741 | Leaf | 11.383 |
| SRR9715739 | Root | 0.131 |
| SRR9715742 | Root | 1.009 |
| SRR9715743 | Root | 0.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.003 |
| SRR8749028 | MeJA induced 9h | 1.420 |
| SRR8749029 | MeJA induced 9h | 2.432 |
| SRR8749030 | Uninduced | 1.528 |
| SRR8749031 | Uninduced | 4.313 |
| SRR8749032 | Uninduced | 3.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.386 |
| SRR8400027 | Control - Root | 1.648 |