Gene detail

Gene detail information of Glyur001375s00028619.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51990.1	8.00E-109	Protein kinase superfamily protein
NR	XP_006587692.1	0	PREDICTED: serine/threonine-protein kinase-like protein At3g51990-like, partial [Glycine max]
COG	YP_634544.1	4.00E-18	serine/threonine protein kinase Pkn2 [Myxococcus xanthus DK 1622]
Swissprot	tr\|Q9SV05\|CCR35_ARATH	4.00E-134	Serine/threonine-protein kinase-like protein At3g51990 (Precursor)
trEMBL	tr\|I1L5J9\|I1L5J9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G36040.1}

Sequence

Transcript Sequence

>Glyur001375s00028619.1
ATGGGGTACCTCTCCCTTTCCTGCAAAGCTGAATCCGCAGTTTCAACCTCCAATTCNTCTCCTTCAAAACCAAACAACAACAAGGAGAAAGAGAAAAAAGAGAAAGAGAAAAGCATAACAAAGATCCAACAGTTCCATTACAGTGACCTTGAAGCAGCCACAAATGGGTTCTCAGAAAGGAAGCTCCTTGGCAAAGGTAGCCATGGCTATGTCTACAAAGCCATTGTTCATGGCCGTCCCGTTGCAGTGAAAAGACCCTCAAGACCAAACTCTCTTCTTCATCATCACAATCATCACAGACCCATTTCTTCTTCTTCACCNGCAGAGATCACAAACGAGCTTGACAACGAGATCGACATCTTATCCAAAATCCAAAGCCCAAGGTTGGTGAATTTGGTTGGTTTCACAAATGACTCAAAAGAAGATAGGCTTTTGGTGGTTGAGTTCATGAGCAATGGTACCCTTTATGATATCCTTCACAATTCATCTTCAAAAGCCCTTAATTGGGGTAGAAGGATTCGTTTGGCTTTGCAAACTGCAAAGGCTATTGATACCCTTCACTCATCAACCCCACCTGTGATTCACCGTGACATAAAGTCAGCAAATGTTCTCATAGACAGAAACTTCAATGCTAGGTTGGGTGATTTTGGTTTGGCACTTATGGGCCATNTTGATGATTATAGGCTTAGGTCAACTCCACCTGCTGGAACAATGGGTTACCTTGACCCTTGTTATGTTACACCTGATAATTTGAGTACTAAGACTGATGTGTTCAGTTTTGGGATCCTTTTGTTNGAGATTATTAGTGGGAGGAAAGCTATTGATATCACTTATTCACCACCTTCTGTTGTGGATTGGGCTATTCCACTTATCAAGAAGGGGAAGTTGCTTTGTGTTTATGACCCTAGGATAGCTCCACCTAAGGATCCAATTGTGAGGAAACAGTTGGCTGTTATTGCTGCAAAGTGTGTTAGGTCTTGTAGGGAGAGAAGGCCTTCCATGAAGGAGATTGTTAATTGGCTTTGTGGGTTGTGTAAGCTTGTGCCACTTCATTCATGGAATGGTTTTAATATCAATATTAACAACCCTTGCATGATGGTTGACACTACTGTGGGAATTGGAAGACCAGTTGAAGCAGCAAGGAATAGTAATGCACAACAATTCAGTTCAAGGTTTGAAGGTGTGGTGGAAGATGGGAACTTTGATGGAGCACCATGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01375	49857	51792	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.14.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001375s00028619.1	PF07714.12	Pkinase_Tyr	60	340	3.40E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.226
SRR1783600	control	7.284
SRR1783602	moderate drought stress	6.375
SRR1811619	moderate drought stress	6.076

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.282
DRR006520	Root Summer glycyrrhizin high producing strain	10.103
DRR006521	Root Winter glycyrrhizin high producing strain	4.741
DRR006522	Root Winter glycyrrhizin high producing strain	4.433
DRR006523	Root Summer glycyrrhizin low producing strain	8.449
DRR006524	Root Summer glycyrrhizin low producing strain	7.605
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.134
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.390

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.519
SRR2868004	Drought Stress (root)	19.448
SRR2967015	Control (root)	14.508

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.126
SRR9715740	Leaf	5.944
SRR9715741	Leaf	5.793
SRR9715739	Root	3.042
SRR9715742	Root	7.260
SRR9715743	Root	5.634

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.091
SRR8749028	MeJA induced 9h	4.255
SRR8749029	MeJA induced 9h	2.673
SRR8749030	Uninduced	4.373
SRR8749031	Uninduced	14.563
SRR8749032	Uninduced	5.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.162
SRR8400027	Control - Root	22.082