Gene detail

Gene detail information of Glyur001375s00028614

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60910.1	1.00E-103	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_003539878.1	1.07E-163	PREDICTED: methyltransferase-like protein 13-like [Glycine max]
COG	YP_004345824.1	4.00E-08	type 12 methyltransferase [Fluviicola taffensis DSM 16823]
trEMBL	tr\|I1LNY8\|I1LNY8_SOYBN	4.00E-164	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01270.1}

Sequence

Transcript Sequence

>Glyur001375s00028614.1
CCAACACCGACAACCACCACCATTTCATCAACCCGATTCGGTGGTTGCCGGAATAGTGGAAAAAAAAAACATGTACAGGGACGTGTCAAGCTGCAACACCTACAACTATGGCGACGCTCTCTATTGGGACGCTCGCTATATCCAAGAGGGAGGTTCCTTTGACTGGTACCAGCGTTACTCTGCTCTCAGACNCTTCGTTCGTCACTACCTCCCTCTCTCTTCCCGCCTCCTCATGGTTGGTTGTGGCAATGCTGTTATGTCAGAGGATATGGTCAAAGATGGTTATGAAGAAATCATGAATATTGATATTTCATCGGTTGCCATTGACATGATGAGAAAAAAATATGAGTACACCCCTCAGCTAAAATACATGCAGATGGATGTCAGGGATATGAGCTTCTTTCCAGATGAATCTTTTGATGGTGTAATTGATAAAGGTATCAGCTACTCTTTTCAATGCAAACCTTATCAAAGAACTCTTGATTCATTAATGTGTGGTACTGATGCTCCGATTAGTGCTTCTCAGATGCTTGCAGAAGTGTGTAGACTTCTAAAACCTGGAGGGACTTATATGTTGATTACATATGGTGATCCTACAGTAAGGATGCCTCATCTAAACAGACCTGTATACAATTGGAAAATTACATTGTATAATATCCCAAGACCGGGATTTCAAAAGCCAGAAAGCGGTAATTCGTCGAGAAAATCATACCTGGACCCCATCCCGCTCACTGAAAAGGGCTTACTTCCAGCAGATTTGGTTCTGGAAGATCCAGATTCTCACTACATATATGTTTGTAGAAAGATAAATGACACAGAGATAGACAATACAATACCCACGTACCAATTAACAGATGATGTTTTATAGCGCTTACTTACATTTGAAGCACTCNTGAAGGTAGGTAGTAGTATTCATTCTCTTCACAAACTTCTATGTGCATCATAGTCATTTTTCTAAGTGGTTGCTCTTGTGTTATCTGTACCATTGGGAGAAGTTACACCCCCATCATTGGGGATGTTTGTAATAGCATTTTATTATCACAAACTAGAGCATATGAGGTTAGCTTTTAGAGATGATTAAAATCTTTGAAGAGATCAGACAAATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01375	17534	21955	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001375s00028614.1	PF08241.7	Methyltransf_11	54	168	1.00E-09
Glyur001375s00028614.2	PF08241.7	Methyltransf_11	54	156	4.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.853
SRR1783600	control	4.620
SRR1783602	moderate drought stress	5.217
SRR1811619	moderate drought stress	5.356

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.034
DRR006520	Root Summer glycyrrhizin high producing strain	6.001
DRR006521	Root Winter glycyrrhizin high producing strain	1.373
DRR006522	Root Winter glycyrrhizin high producing strain	1.256
DRR006523	Root Summer glycyrrhizin low producing strain	5.903
DRR006524	Root Summer glycyrrhizin low producing strain	5.786
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.559
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.761

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.545
SRR2868004	Drought Stress (root)	9.811
SRR2967015	Control (root)	8.775

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.140
SRR9715740	Leaf	41.592
SRR9715741	Leaf	24.252
SRR9715739	Root	1.099
SRR9715742	Root	2.540
SRR9715743	Root	1.649

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.542
SRR8749028	MeJA induced 9h	12.409
SRR8749029	MeJA induced 9h	24.960
SRR8749030	Uninduced	4.963
SRR8749031	Uninduced	1.516
SRR8749032	Uninduced	4.771

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.691
SRR8400027	Control - Root	6.936