Gene detail

Gene detail information of Glyur001375s00028612

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13790.1	1.00E-25	AGAMOUS-like 15
NR	XP_004516227.1	3.80E-92	PREDICTED: agamous-like MADS-box protein AGL15-like [Cicer arietinum]
Swissprot	tr\|Q39295\|AGL15_BRANA	1.00E-30	Agamous-like MADS-box protein AGL15
trEMBL	tr\|K7LPX9\|K7LPX9_SOYBN	8.00E-76	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G16105.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01375	5895	7842	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003700 transcription factor activity, sequence-specific DNA binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001375s00028612.1	PF01486.12	K-box	57	146	8.60E-19

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.049
SRR1783600	control	0.050
SRR1783602	moderate drought stress	0.308
SRR1811619	moderate drought stress	0.304

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.290
DRR006520	Root Summer glycyrrhizin high producing strain	0.161
DRR006521	Root Winter glycyrrhizin high producing strain	10.688
DRR006522	Root Winter glycyrrhizin high producing strain	10.310
DRR006523	Root Summer glycyrrhizin low producing strain	0.144
DRR006524	Root Summer glycyrrhizin low producing strain	0.297
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.502
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.574

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.698
SRR2868004	Drought Stress (root)	1.612
SRR2967015	Control (root)	1.054

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.019
SRR9715741	Leaf	0.496
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.041

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.479
SRR8749028	MeJA induced 9h	5.334
SRR8749029	MeJA induced 9h	11.191
SRR8749030	Uninduced	4.656
SRR8749031	Uninduced	11.153
SRR8749032	Uninduced	11.639

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.559
SRR8400027	Control - Root	0.291