Gene detail information of Glyur001374s00029996.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06850.1 | 4.00E-71 | basic leucine-zipper 52 |
| NR | XP_004500364.1 | 0 | PREDICTED: transcription factor RF2b-like [Cicer arietinum] |
| Swissprot | tr|Q6S4P4|RF2B_ORYSJ | 2.00E-102 | Transcription factor RF2b |
| trEMBL | tr|K7MQ32|K7MQ32_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G05880.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01374 | 34686 | 37747 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bZIP |
| EAR motif-containing Proteins | bZIP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001374s00029996.1 | PF00170.16 | bZIP_1 | 184 | 242 | 4.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.111 |
| SRR1783600 | control | 22.199 |
| SRR1783602 | moderate drought stress | 8.925 |
| SRR1811619 | moderate drought stress | 8.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.334 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.150 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.682 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.661 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.286 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.126 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.214 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.457 |
| SRR2868004 | Drought Stress (root) | 11.266 |
| SRR2967015 | Control (root) | 13.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.663 |
| SRR9715740 | Leaf | 10.074 |
| SRR9715741 | Leaf | 9.303 |
| SRR9715739 | Root | 8.817 |
| SRR9715742 | Root | 8.981 |
| SRR9715743 | Root | 7.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.882 |
| SRR8749028 | MeJA induced 9h | 13.445 |
| SRR8749029 | MeJA induced 9h | 8.297 |
| SRR8749030 | Uninduced | 4.123 |
| SRR8749031 | Uninduced | 3.070 |
| SRR8749032 | Uninduced | 3.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.686 |
| SRR8400027 | Control - Root | 16.728 |