Gene detail

Gene detail information of Glyur001371s00034655

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G43810.2	Stabilizer of iron transporter SufD / Polynucleotidyl transferase
NR	XP_004497991.1	PREDICTED: protein argonaute 10-like [Cicer arietinum]
Swissprot	tr\|Q9XGW1\|AGO10_ARATH	Protein argonaute 10
trEMBL	tr\|A0A072VHY4\|A0A072VHY4_MEDTR	Protein argonaute {ECO:0000256\|RuleBase:RU361178}

Sequence

Transcript Sequence

>Glyur001371s00034655.1
TAAGAGGCAACTAATAAAAAAAAGGCAAAGGGAGGGGGGCAGAGGCAAAGCCTTTAACACGTGATAAAGAAAACACCAAAAGCTCTTTTGCATGCGTGTATAAGATTCATCACCATCATCATCTTCTTTTCTCATCTCTTCCTCCCTCTTTTATTTTTTTCCCTTCTTCTTCTTTGAAAATTCTGAATCCTCCAAAATACCCCATTTTTTTTCTCCCCATTCCTTTCACGTGAGTACCAAGTTAGCCATAAGGGCCTTCTTTGTTAACCAAGAGAAGAAAGAGGTTATAGGCAAAAACTAAACGTGAAAAACTGGTAATTTGCTGAACCTTGTTGTCACCTTTGAACCACTGTGTACCTCTTCTCTGTGTATATACTATTATTATTCCAGCAAACATGCCAGTGAGGCAAATGAAAGAGAGCTCAGAGCAACACCTTGTGATCAAAACCCATTTGCAAAACCCCATGAATATTCACCCAGCTAAGAAGGTTAGTTCTAAGGCTGTTCAAAATGGCAAAGGTCCACCAACACTGCCACAAGAACAACCACATAACCAAACTTCACCACCTCAGGCAAGGACTGGGGGAAGAAGGAGGAGCAGGGTTGGTAGAAAATCTGATCAAGGTGATGTTTTTATGAGACCCAGTTGCAGACCTTGCACTGTTGTGACAAACACTGCAAATGGGCATGTTGGAAATAATGGAGGAAGCAGCAATAGCATTAGCATCATCTCTGGTGGTGGTGGTGACATAGAGATGGGTTACCCTACTTCAAATAGCAACAAGTCTTTGAGCTTGGCTCTTAGGCCAGGGTATGGACAAGTTGGGACAAAATGCATTGTGAAGGCCAACCACTTCTTTGCAGAATTACCAGACAAGGACTTGAACCAGTATGATGTCACTATTACACCAGAAGTGTCTTCCAAAGCAGTGAACAGGTCCATCATTGCTGAACTTGTGAGGCTGTACAAAGAGTCTGACCTTGGGATGAGGCTTCCAGCTTATGATGGCAGGAAAGGCCTGTACACAGCAGGGGCGCTTCCATTTTCCTGGAAAGAGTTTAACATTAAGCTTATTGATGATGAGGATGGAATTAATGGCCCCAAAAGGGAAAGAGAATACAAAGTGGTGATCAAGTTTGTTGCCCGGGCGAACTTGCATCACTTGGGGCAGTTTCTAGCTGGTAAGCGTGCTGATGCTCCTCATGAGGCAATCCAAATTCTTGACATCGTACTAAGAGAGCTATCATCTAATAGATTTTGCCCCATTGGGAGGTCCTTTTTTTCACCTGATATTAGAACACCACAAAGGCTTGGAGAGGGATTGGAGTCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATCGATATGGCTTCTGCTGCATTCATTGAACCACTTCCAGTGGTGGAATTTGTTGGCCAGCTATTAGGAAAAGATGTGCTGTCAAGGCAATTGTCTGATGCTGATCGAGTCAAGATTAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGGAGTGTTAGAAGAAAGTATCGTGTTTCAGGTTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTAGATGAGAACTCAACTATGAAATCAGTGGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTAAACATACCCACCTTCCTTGTCTTCAAGTAGGAAATCAGAAGAAAGCAAACTATTTACCTATGGAGGCCTGCAAAATTGTCGAGGGGCAACGTTATACTAAAAGGTTGAATGAAAAGCAAATTACTGCTCTCCTGAAAGTCACATGCCAGAGACCCCGCGATCGGGAAAATGACATTTTGCGGACTGTTCAGCATAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGTATTAAAATCAGTGAAAAGCTAGCTTCNGTGGAAGCACGAATTCTACCTGCACCTTGGCTTAAATATCATGAAAGTGGGAAAGAGAAAAATTGTTTGCCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGTATGAACGTTAGCCGGTGGGCATGCATAAATTTTTCACGAAATGTGCAAGATAGTGTTGCTCGCACCTTCTGTAATGAGCTTGCGCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAGCCTATTATCCCCATCTACAATGCCAAGCCTGAGCACGTGGAAAAGGCTTTAAAGCATGTTTACCATGTTTCAATGAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGCAATATTGCCTGACAACAATGGCTCTCTCTATGGTGATCTCAAGCGGATTTGTGAGACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACTAAGCATGTCTTTAAGATCACTAAGCAGTACTTGGCCAATGTGTCTCTGAAGATCAATGTTAAGATGGGAGGTAGAAACACCGTTCTTGTCGATGCCGTAAGCTGCAGAATACCATTAGTTAGTGACATACCAACTATAATATTCGGAGCAGATGTTACCCATCCTGAAAATGGAGAAGACTCTAGCCCCTCAATCGCAGCAGTAGTAGCATCCCAAGACTGGCCTGAAGTGACAAAATATGCAGGTTTAGTGTGTGCTCAAGCTCAAAGACAGGAACTTATACAAGATTTGTACAAAACTTGGCATGACCCTGTCCGTGGCTTAGTTAGTGGTGGCATGATTCGAGATTTGTTGGTTTCCTTTAGAAAGGCAACAGGACAGAAGCCATTAAGGATTATATTTTACAGGGATGGCGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTATATGAGTTGGATGCGATTCGGAAGGCATGTGCTTCTTTAGAGCCAAACTATCAACCTCCGGTAACTTTCATAGTTGTACAAAAAAGACATCATACTCGGTTATTTGCAAACAACCACAGGGACAGGACCAGTACAGATAAGAGTGGAAATATATTGCCCGGGACTGTTGTTGATTCCAAAATCTGTCACCCAACGGAGTTTGATTTTTATCTCTGTAGTCATGCTGGCATCCAGGGTACAAGTCGTCCAGCGCATTATCACGTTCTATGGGATGAAAACAACTTTACAGCAGATGGGATTCAGTCTCTGACAAATAATCTCTGTTATACATATGCCAGGTGTACCCGCTCTGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCTTTCCGAGCCCGTTTCTACATGGAACCAGACCTGCAGGAGCATGGCTCCACCACTGGTGGTGGTGGTCGTGGCAGCTCCAAGGCGACACGTGCAGCAGCCGGAGACTCTGGTGTCAAGCCATTGCCAGCCTTGAAAGAAAACGTGAAGAGAGTAATGTTCTATTGTTAGAGATTGTGAAGCAGTTTGGCAGCGGTAGTTGGGGAGAGCATGGAAATCAAATGGTACAATATTGCAGCAAAACCATCATGCATTTGAAAGATTTTAACACCTCCCCCCAAATTACTTGTACATTAGTGGCTCTTCAGCATAGTGGTAACGTTTCCCATAAATAGCTCCATGATTATAGTTCTAGAGGCCTAGTTTAGGATTCCTACAAGTATTTGGCTAGAACATGGGAGACACACAATAGGTTTAAATTAAACATTTAGAGTTGCTAACCCCTCTGTAGTCTGTCCAACCATCATGAAGGATGGTATGGAGTCTGGCATTGT

Protein Sequence

>Glyur001371s00034655.1
MPVRQMKESSEQHLVIKTHLQNPMNIHPAKKVSSKAVQNGKGPPTLPQEQPHNQTSPPQARTGGRRRSRVGRKSDQGDVFMRPSCRPCTVVTNTANGHVGNNGGSSNSISIISGGGGDIEMGYPTSNSNKSLSLALRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRKGLYTAGALPFSWKEFNIKLIDDEDGINGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPHEAIQILDIVLRELSSNRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRVKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTVQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMNVSRWACINFSRNVQDSVARTFCNELAQMCQVSGMEFNPEPIIPIYNAKPEHVEKALKHVYHVSMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAQRQELIQDLYKTWHDPVRGLVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRTSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDLQEHGSTTGGGGRGSSKATRAAAGDSGVKPLPALKENVKRVMFYC

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01371	23058	32442	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001371s00034655.1	PF08699.5	DUF1785	290	341	7.40E-21
Glyur001371s00034655.1	PF02170.17	PAZ	343	478	2.00E-34
Glyur001371s00034655.1	PF02171.12	Piwi	631	950	5.10E-113
Glyur001371s00034655.2	PF08699.5	DUF1785	290	341	7.40E-21
Glyur001371s00034655.2	PF02170.17	PAZ	343	478	2.00E-34
Glyur001371s00034655.2	PF02171.12	Piwi	631	950	5.10E-113

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.477
SRR1783600	control	8.567
SRR1783602	moderate drought stress	11.011
SRR1811619	moderate drought stress	10.956

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.592
DRR006520	Root Summer glycyrrhizin high producing strain	15.434
DRR006521	Root Winter glycyrrhizin high producing strain	2.741
DRR006522	Root Winter glycyrrhizin high producing strain	2.714
DRR006523	Root Summer glycyrrhizin low producing strain	13.326
DRR006524	Root Summer glycyrrhizin low producing strain	13.139
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.627
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.538

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.765
SRR2868004	Drought Stress (root)	20.373
SRR2967015	Control (root)	13.349

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.672
SRR9715740	Leaf	3.852
SRR9715741	Leaf	3.472
SRR9715739	Root	4.180
SRR9715742	Root	21.667
SRR9715743	Root	16.836

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.514
SRR8749028	MeJA induced 9h	0.621
SRR8749029	MeJA induced 9h	1.326
SRR8749030	Uninduced	0.168
SRR8749031	Uninduced	0.428
SRR8749032	Uninduced	1.587

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.062
SRR8400027	Control - Root	12.195