Gene detail

Gene detail information of Glyur001369s00030295.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G31970.1	0	DNA repair-recombination protein (RAD50)
NR	XP_003552170.1	0	PREDICTED: DNA repair protein RAD50-like isoform X1 [Glycine max]
COG	NP_613974.1	7.00E-09	SMC1-family ATPase [Methanopyrus kandleri AV19]
Swissprot	tr\|Q9SL02\|RAD50_ARATH	0	DNA repair protein RAD50
trEMBL	tr\|I1MYA5\|I1MYA5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G00530.1}

Sequence

Transcript Sequence

>Glyur001369s00030295.1
GTAGTAAAAAATTAAAAGTACTGACTGCTGAGCTAAGTGACCTTGTTGAGCGCGCAGGGGTGAGAGAGAGTGAGTGTCTGAGTGAGTTATGAAGAAGAGGTGAATGGTGTTTGGGAGTGAGGAAGCGAAGGATCAAAGATGAGTACGGTTGACAAGATGTTGATCAAGGGCATCCGGAGNTTCGACCCGGAGAACAAGAACGTCATCACCTTCTTCAAGCCCTTAACCCTAATCGTTGGCCCCAACGGTGCCGGCAAAACTACCATCATCGAGTGCTTGAAGCTTTCATGCACCGGTGAGTTGCCTCCTAATGCCAGGTCTGGTCACAGCTTCATTCACGACCCCAAGGTTGCGGGGGAAACTGAAACGAAGGGACAGATTAAGCTCCGGTTCAAAACCGCCGCCGGTAAAGACGTGGTTTGCATAAGGTCCTTTCAGCTCACGCAAAAGGCCTCCAAGATGGAATACAAGGCAATTGAGAGTGTGCTTCAAACTATTAATCCTCATACAGGCGAGAAAGTTTGCCTTAGTTATAGATGTGCTGACATGGACCGAGAGATTCCCGCGCTCATGGGTGTTTCAAAGGCCATTTTGGAAAATGTCATATTCGTTCATCAAGATGAAGCCAATTGGCCACTGCAGGATCCTTCCACNTTAAAGAAGAAGTTCGACGATATCTTTTCCGCAACTCGATACACAAAGGCACTGGAGGTTATAAAGAAACTTCACAAGGATCAAGCTCAAGAGATAAAGACNTACAAGCTGAAACTGGAAAATCTTCAAACACTGAAAGATGCAGCTTATAAGCTTCGGGAAAGCATTGCACAGGATCAGGAGAAAACAGAATCTGTAAAAGGTCAGATACAACAGTTGGATGAAAGCATTAAAGATTTGGACACTAAAATTGATCACACGGAAAAAACATTGAAACATTTGTGGAAGCTGCAGGAGCAAATATCAACTAAAACTGCACAACGAAGCACTCTGTTTAAGGAACAACAGAAGCAATATGCCGCTCTTGCTGAGGAGAATGAAGACACTGATGAAGAGTTGATGGAATGGAAGACCAAGTTTGATGAAAGAATTGCAATTTTACAAACTCAAATAAGCAAGTTGGAAAGAGAGATGGATGACATTGACATCAAGAGTTCTGTCAATAAGAAGACCATTGATGATTCCATCTGGGAGATCAGCAAGCTACAAACTGAAGCAGAAGCTCACATGTCTTTGAAAAATGAACGTGATTCCTCTATTCAAAATCTTTTTGCTAGGTATAACTTAGGGTCTCTTCCAAAGCCACCCTTCAGTTCTGAGGTCNTTTTGAACCTCACTAATCGTGTAAAATCAAGGTTGGGGGATCTTGAGAAGGATTTGGAAGATAAAAAGAAAGCAAATGACACTGAACTCAAGATGGNATGGGATTGCTACATGAATGCAAATGACAACTGGAAAAATACTGAGGCTAAAATACAAGCTAAGAGAGAGATCAAGAGTGGCATTATAAAGCGCATTGAAGAGAAGAAAAATGAGCATGATTCATTTGAACTTCAAATATCTAATGAAGACTTTTCTCATATAGATGAGAGNGAAAGAAATTTGCAAATTGAGGTGGAGAGGAAGACCAAGCAACTCGCTGAAAGAGAATTTGAACCAAATATACGTCAAATGCAAAGTGAGCTATATAGTGTAGATCAAAAGATTAAGGCTGTCAANCGTGAGAAGGATATCATGGCTTCTGATTCAGAGGACAGAGTGAAGCTATCTCTTAAGAAGGCAGAGTTGGAGAATCAGAAGAAGAAACATAAAAAGATAATCGATGACCAAAAGGATAAAATAAGAAGGGTGCTAAAAGGGAGGATTCCTCCCGATAAGGACGTGAAGAAGGAAATTACACAAGCATTAAGGAGTGTTGGAGCTGAATTTGATGACCTGAATGCAAAGTACCGTGAAGCTGAGAAGGAAGTCAATATGTTGCAGATGAAAATACAAGAAGCTAATAGTAACCTATCCAAACACCACAAGGATATGGAATCAAGAAAGAGATTTATTGAATTCAAGCTTCAGTCTTTGGATCAGCAATGTTCTGGAATTGATTCTTATCCCAAAGTTTTAGAGTCTTCCAAGGAGAAAAGAGATGTACAGAAAAGCAAATTTAACATTGCTGATGGTATGCGACAAATGTTTGATCCTTTTGAAAGGGTTGCCAGAGCTCATCATATTTGCCCTTGCTGTGAGCGTTCTTTCACTGCAGAAGAAGAAGACAATTTTGTCAAGAAGCAAAGAGTGAAGGCTGCTAGTTCAGCTGAACATATGAAAGTTCTTGCTGTGGAGTCCTCAAATGCAGATTCTCAATATCAGCAGTTGGACANGCTTCGTATGGTTTATGAAGAATATGTTAAACTCGGCGAGGAGACAATCCCTAATGCTGAAAATGAACTCCAGCAACTTAAGGAAGAGCTGGATAACAAATCCCAGGCACTAGATGATGTTTTAGGTGTTTTAGCTCAAGTAAAGACTGATAAGGATTTGGTTGAGACATTGGTGCAACCTGTTGAAAATGCTGATCGGCTTTTCCAAGAAATTCAAGCTTTGCAAAAGCAAGTTGAGGATTTAGAATATAAGCTTGATTTTCGAGGACCAGGAGTAAGGACTCTGGAAGAAATTCAATGGGAGCTCAATGCATTGCAGGGCACAAAGGACAATTTGCATACTGAATTAGAGAAATTGAGAGAAGAGCAGAGGTATATGGAGAATGATCTATCAAATATTCAAATACGGTGGCATACTTNAAGGGAGGAGAAAGTGAAAGCAGCTAATACACTGCAGGATGTNAAAAGATTAGAAGAAGAATTAGAACGTTTGACCGAAGAAAANGCCCAAGTCGATCTTGATGAGAAGAGTCTGGCAGAAGCTCTTGGACCTTTATCCAAGCACAAAGATAAATTACTTGCTGACCATAATGAACTGAAAATTAGACTTAATGGCGAGTATGAGAATCTGGCTGAACAAAAGAGAAGTTATCAGCAAGAAGCCGAAACACTTTTTAAAATGACTTCTAAGATTAAAGAGTACTCTGATTTAAAGAAAGGAGACAGGTTGAAGGATCTGCAGGAAAAGAGATNGCTATCAGAATCTCAGCTTCAAAGTTGTGAAACTAGGAAGCAGGAAATTTTAGATGAACTAAACAAACGTAAAGATTCGATGCGAAATCAAGATCAATTAAGACGAAATATTGAGGACAACTTAAATTACAGGAAAACAAAGGCTGAAGTAGATGAACTAGCACGTGAAATTGAAACACTTGAAGAAAATATATTGAAGGTTGGTGGGATTTCCACAATTGAAACTGAACTCCAGAANTTATCCCAGGAGAGGGAGAGGCTTCTTTCAGAGTCAAACAGGTTCCAAGGAACAATGTCTGTTTACCAGAGCAATATTTCCAAAAATAAGATTGATCTTAAGCAGGCTATATACAAGGACATAGATAAGCGATACTTTGACCAGCTTATCCAGCTTAAGACAACTGAAATGGCAAACAAGGATCTGGACAGATACTACAATGCACTTGATAAAGCACTGATGCGCTTTCACACAATGAAAATGGAAGAAATCAACAAAATTATTAGGGAATTGTGGCAACAGACTTATAGAGGACAGGATATAGACTACATTAATATTCATTCTGATTCTGAAGGTGCTGGGACCCGATCCTACAGTTACAGGGTTCTCATGCAGACTGGTGATGCAGAGTTAGAAATGAGAGGAAGATGTAGTGCGGGTCAGAAGGTGCTGGCATCTCTTATCATAAGGTTGGCTTTAGCAGAAACGTTTTGCCTCAATTGTGGAATACTTGCATTGGATGAACCAACTACAAATTTGGATGGACCAAATGCTGAAAGTCTGGCTGCTGCTCTCCTAAGGATCATGGAGGACAGAAAAGGCCAGGAAAATTTTCAGCTGATTGTGATCACTCATGATGAACGTTTTGCTCAACTGATTGGACAGCGCCAGCANGCGGAGAGATATTATCGAGTCGCAAAAGATGACCATCAGCACAGTATAATCGAATCCCAGGAGATATTTGACTGAAGGATGGATTTTATCTAGTTACTCCTTCGAAGTTCTTGTTGGAGGATCTGCAGATATATAAAACCAGAGCCCCAAAGGCATATCTCAATGTCATTTATGTGGTTCATATATGGATACTGAGGATGAGATGTCTCAGTTAATTAAATGCCAGACACTCGTTCACTACAATTTGTACACTATTTTCTGTAAGTTTGTTTTGGTTATATTTTGGCATTTCAACCTTGTGGCCTACTATGACAAAAAAAGAAAAAGAACTTGTGGCTCACTCACTAACCTTACAAATAATACACGTATTATTTCATTTTTTTATTAAGAAAATATGATATCAGGGTTACANAAACATAACAAACAAACACAAACTTAAAATTGAATTGAAAAACCATCGAGCTAGCCTATGTGACACCCAAAAAGAAAGCATTTGTTATCTTTTATCTCCAGTTCCCCATCTTGCGGAGGACAGTAAGACGATCGGGAAGAGAGTTGCATTGTCAACCTAATCCTTGTACTTCATTTCAGATACTTGGAATCCAGGCATATCGAATGAGGCTGAAAACTTCTCAACATCAGCTTTGAGTTCTTCAATAGCTTTATTGTTCACCAACCCCTTGTTGAAATCCTTCAAAAGTTTGCCATATTCCTTTTGAATCTCTAATGTGAGAGTCACCGCACGGTGAAGGAACTCTGCAATCTGCTCGAAGTCCTTCTCAACCAAGCCCCTTGAAGTCATAGCTGGGGCACCTGTTAACAGAAACTCCTGACAATTACTCTTGCAAAATGATGACTTTCGCTAATACATTATTAAAAAAAACATGCTGAATAACATCAACACTTCACATAAACAAGGCCTTCCAATTTTGGCTTTCTGGTGGTGAGAAAAAAAGGGTTTCCAAATGCTTAATCAGAAAAGTAATTACTGCAGCACCATTGCCCAATGTTTTAGCATTAAAAACACATCTTCCATTANATTCCGTCTAACAATAATCTAGCATAACTTTCTAATCAAAGAATGTATGTATCTTGTATTCAAGTTCATATATACAGGAGATCTTACCAATCCGGACACCTCCAGGGGCCAAGGCACTGCTATCACCAAAAACAGCATTCTTGTTCACAGTAATGTTACAGAGGTCACAAAGTTTCTCCACCTTATTGCCTGCAAGAATANGGAAATTGCATCAACAAAATTGGTACCTCAACTTTAAACAATTAAAATAAACCCAATGAGCTTGCTGCCACTTTTTTCCTAGGCAGTAGTATGTTAGGTATGGATTTACCAGTCAAGCCAAGAGGGCGGAGATCCCACAAGACAAGATGGTTCTCAGTTCCTCCAGTGACAAGNCTGTATCCCTTGCTCATCAGGTAGTTTCCAAGTGCAGCTGCATTGGCCTTAACCTGTTTGGCATATGCCTTGAACCCAGGCATCATGGCCTGTTTCAGGGCAACAGCAAGGGCACCAATCTGGTGGTTGTGAGGACCACCCTGAAGGGATGGGAAGACCGCGAAGTTGATCTTGTCCTCAAAATCGTAAACCGCATTCTCTGGCTGGCCCTTCTTGGGTGGCTTAGGTCCCTTCCGGTAGAAGATCATACCAGCCCTGGGACCCCTCAAACTCTTATGGGTGGTTGTTGTCACAATGTCACAGTACTCAAAGGGATTATTAGCTTCCTGTATCCACAAAAACCAATTCATCAAATATTAAATAAAAAAGTAGTTTTTATGTAAAATAATCNAATAATTGTTTTTGTAGAGAT

Protein Sequence

>Glyur001369s00030295.1
MSTVDKMLIKGIRXFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESIAQDQEKTESVKGQIQQLDESIKDLDTKIDHTEKTLKHLWKLQEQISTKTAQRSTLFKEQQKQYAALAEENEDTDEELMEWKTKFDERIAILQTQISKLEREMDDIDIKSSVNKKTIDDSIWEISKLQTEAEAHMSLKNERDSSIQNLFARYNLGSLPKPPFSSEVXLNLTNRVKSRLGDLEKDLEDKKKANDTELKMXWDCYMNANDNWKNTEAKIQAKREIKSGIIKRIEEKKNEHDSFELQISNEDFSHIDEXERNLQIEVERKTKQLAEREFEPNIRQMQSELYSVDQKIKAVXREKDIMASDSEDRVKLSLKKAELENQKKKHKKIIDDQKDKIRRVLKGRIPPDKDVKKEITQALRSVGAEFDDLNAKYREAEKEVNMLQMKIQEANSNLSKHHKDMESRKRFIEFKLQSLDQQCSGIDSYPKVLESSKEKRDVQKSKFNIADGMRQMFDPFERVARAHHICPCCERSFTAEEEDNFVKKQRVKAASSAEHMKVLAVESSNADSQYQQLDXLRMVYEEYVKLGEETIPNAENELQQLKEELDNKSQALDDVLGVLAQVKTDKDLVETLVQPVENADRLFQEIQALQKQVEDLEYKLDFRGPGVRTLEEIQWELNALQGTKDNLHTELEKLREEQRYMENDLSNIQIRWHTXREEKVKAANTLQDVKRLEEELERLTEEXAQVDLDEKSLAEALGPLSKHKDKLLADHNELKIRLNGEYENLAEQKRSYQQEAETLFKMTSKIKEYSDLKKGDRLKDLQEKRXLSESQLQSCETRKQEILDELNKRKDSMRNQDQLRRNIEDNLNYRKTKAEVDELAREIETLEENILKVGGISTIETELQXLSQERERLLSESNRFQGTMSVYQSNISKNKIDLKQAIYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYINIHSDSEGAGTRSYSYRVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIGQRQXAERYYRVAKDDHQHSIIESQEIFD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01369	51271	63840	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10866	RAD50	EC:3.6.-.-	Homologous recombination	map03440
			Non-homologous end-joining	map03450

Gene Ontology

biological_process

GO:0000723 telomere maintenance

GO:0006281 DNA repair

cellular_component

GO:0005634 nucleus

GO:0030870 Mre11 complex

molecular_function
GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001369s00030295.1	PF13476.1	AAA_23	8	256	3.30E-27
Glyur001369s00030295.1	PF04423.9	Rad50_zn_hook	689	725	1.20E-05
Glyur001369s00030295.1	PF13558.1	SbcCD_C	1191	1259	1.60E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.529
SRR1783600	control	13.662
SRR1783602	moderate drought stress	22.157
SRR1811619	moderate drought stress	22.309

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.071
DRR006520	Root Summer glycyrrhizin high producing strain	22.260
DRR006521	Root Winter glycyrrhizin high producing strain	13.636
DRR006522	Root Winter glycyrrhizin high producing strain	13.934
DRR006523	Root Summer glycyrrhizin low producing strain	21.760
DRR006524	Root Summer glycyrrhizin low producing strain	21.851
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.306
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.471

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.629
SRR2868004	Drought Stress (root)	33.160
SRR2967015	Control (root)	33.060

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.839
SRR9715740	Leaf	19.076
SRR9715741	Leaf	20.934
SRR9715739	Root	26.995
SRR9715742	Root	21.284
SRR9715743	Root	22.901

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.395
SRR8749028	MeJA induced 9h	29.043
SRR8749029	MeJA induced 9h	17.566
SRR8749030	Uninduced	27.816
SRR8749031	Uninduced	10.630
SRR8749032	Uninduced	14.819

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.016
SRR8400027	Control - Root	38.678