Gene detail

Gene detail information of Glyur001369s00030293

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13870.1	7.00E-42	Werner syndrome-like exonuclease
NR	XP_003552137.1	4.56E-122	PREDICTED: Werner Syndrome-like exonuclease-like [Glycine max]
COG	YP_006405557.1	5.00E-07	ribonuclease D [Belliella baltica DSM 15883]
Swissprot	tr\|Q84LH3\|WEX_ARATH	7.00E-56	Werner Syndrome-like exonuclease
trEMBL	tr\|I1MYA3\|I1MYA3_SOYBN	2.00E-122	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G00520.1}

Sequence

Transcript Sequence

>Glyur001369s00030293.1
GGTTTTTGTACCCAAACACAATTACACACTNAAAATTGATTTTGCTAGCATTCGGAGGCGCAATTTTCAATTTTGAGATGAAGAGGGAAGGAGAAGGAGAAGTGGGTTCGACACGACTTGCCTCATTCGTTTGTGAATGCGAGCCTTTCTCTGAGGAAGACATTGAAGCCATCGAAGCCACTTTTCAATCCCCTCTCCCCAACCCCAACCCCAACCCCGACGACGACGACAACAACAACAACAACAACAACAACAAACGTCCCTTCGAAGCTCACACTCACTCTCCCCCTTCTCGCCTCCGCCGCCGCCGCCGCCGCTTGCCCACATCGCTTCTCGCTCTTCAGCACACAAGTGATCTTTCTTCCTCACCTTCTCAAGGTTATTCAAGGATGCAGTTGCCTGTAATGAAGTTTAGTGGCCAAATTATGTATAGCAGGACTTTTGATGGTGTGGAGAAAGCCATAACAGAGCTCTTAAAAATTCTGGAAGAAAAGAAAAGAGAGATGATGCAAACTGCAATTGGAATAGACATTGAATGGAGACCCTCCTTCAAAAAAGGTGTTCCACCTGGGAAGGTAGCAGTGATGCAGATATGTGGTGACACTGGTCATTGTCATGTTCTACATCTAATTCATNCTGGAATCCCTCGAAATCTACAGCTTTTACTTGAAGATTCCACAGTTTTGAAGGTTGGAGCTGGGATTGGNGGCGATGCTCTTAAGGTTTCTAGAGATTATAACATATCTATCAAAGGTGTGGAAGATCTTTCTTTTCATGCTACGCAAAAGCTAGGTGGTGATGGAGGTCCTCATAAGTGGGGTCTTGCATCTTTGACTGAAAAACTTTTATCAAAACAGGCCATTAAAGATCTCCCTGCTGCCCAGGAAGTTACTGACACAAGTGGCGAAGTTGATGTTGTACCGCAACAATGACCATATCTCTGGTCTGTGTATCAAATTTCATTTCTTGTTAGCTACATTTAATCATTTATATGTACTAAATGTCTGTTGTAATCTTCTGAGAATGTCCCAAGAAATCAAGCCTTCTGTATTTAGTCCCTTGTTNGCTACATTTAATCATTTTTAATTTGTTTGATGTGGATGTTTTACTAAGTAAAAGGACATGGAACAGAATGATCATTTTGTCTTAGGAAACACTCCCTAATGTTCATCTCAAAGTTTCACATATATTGAGCTTAAATTATAGAACTCTTGTGGTACAAGGATGTTATCTCGCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01369	41644	46291	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006139 nucleobase-containing compound metabolic process

molecular_function

GO:0003676 nucleic acid binding

GO:0008408 3'-5' exonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001369s00030293.1	PF01612.15	DNA_pol_A_exo1	130	262	1.80E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.451
SRR1783600	control	8.303
SRR1783602	moderate drought stress	12.278
SRR1811619	moderate drought stress	13.446

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.336
DRR006520	Root Summer glycyrrhizin high producing strain	14.020
DRR006521	Root Winter glycyrrhizin high producing strain	25.561
DRR006522	Root Winter glycyrrhizin high producing strain	23.983
DRR006523	Root Summer glycyrrhizin low producing strain	10.733
DRR006524	Root Summer glycyrrhizin low producing strain	11.328
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.771
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.888

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.845
SRR2868004	Drought Stress (root)	9.048
SRR2967015	Control (root)	10.875

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.526
SRR9715740	Leaf	0.703
SRR9715741	Leaf	1.574
SRR9715739	Root	6.010
SRR9715742	Root	6.498
SRR9715743	Root	6.575

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.150
SRR8749028	MeJA induced 9h	22.354
SRR8749029	MeJA induced 9h	35.379
SRR8749030	Uninduced	41.274
SRR8749031	Uninduced	33.977
SRR8749032	Uninduced	51.478

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.874
SRR8400027	Control - Root	26.549