Gene detail

Gene detail information of Glyur001369s00030289.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23820.1	0	UDP-D-glucuronate 4-epimerase 6
NR	XP_004502237.1	0	PREDICTED: UDP-glucuronate 4-epimerase 6-like [Cicer arietinum]
COG	YP_004010574.1	1.00E-105	NAD-dependent epimerase/dehydratase [Rhodomicrobium vannielii ATCC 17100]
Swissprot	tr\|Q9LIS3\|GAE6_ARATH	0	UDP-glucuronate 4-epimerase 6
trEMBL	tr\|G7JA85\|G7JA85_MEDTR	0	UDP-D-glucuronate 4-epimerase {ECO:0000313\|EMBL:AES71913.1}

Sequence

Transcript Sequence

>Glyur001369s00030289.1
ATGCCGAATATGGCTTCTCCACCAGACACAAGCAAGACCATAAAGCTAGAGCGTTACAACAGTTACATCCGGAGAGTGAACAGCACGAAGCTCCTGAACGCCTCGTCGAAGCTTCTCTTCCGAGCAACGCTCCTTNTAGCACTCGTCCTCGTGTTCCTCTTCACCTTCAACTACCCTTACACACTCTCCGACATCGGCAACGGCGGAAGCACCAACCCACACGCCCACAGCCGGTTCCTCTCCTCCGCATTCGGCGGCGGCGGCGCAGCCTGGGAGAAGCAGGTCCGTCTCTCCTCAACCCCTCGCCGCTCAAACGGCATGTCGGTGCTGGTAACCGGCGCAGCCGGTTTCGTCGGTACTCACTGTTCCCTCGCTTTAAAGAAGCGCGGTGACGGTGTCCTCGGACTCGACAACTTCAACACCTATTACGACCCGTCGCTTAAGCGTGCACGACAAGCGCTTCTCTCAAAACACCAAATCTTCATCGTCGAGGGAGACTTAAACGACGCGCCGTTGCTGTCAAAACTCTTCGACGTCGTGCCGTTTACTCACATCCTCCACTTAGCCGCACAAGCCGGTGTCCGTTACGCCATGCAGAACCCGCAGTCCTACATTAAATCAAACATTGCCGGCTTCGTGAACCTTCTAGAAGTTGCCAAAGCCGCGAAGCCCCAACCGGCAATTGTTTGGGCCTCTTCGAGTTCAGTTTACGGGCTCAACACCGAGAACCCTTTCTCGGAGCTCCACCGTACCGACCAACCGGCGAGCCTCTACGCCGCCACGAAGAAAGCCGGCGAGGAAATCGCACACACCTACAACCACATCTACGGNCTATCGTTGACCGGTCTCCGTTTCTTCACGGTGTACGGTCCTTGGGGTAGACCAGACATGGCTTACTTCTTCTTCACGAAGGACATCCTTCAGGGGAAGACCATTGATGTTTACCAGACGCAGGATGGGAAGGAGGTGGCGCGTGACTTCACGTTCATCGACGACATCGTTAAGGGGTGCCTAGGGGCTCTTGACACGGCGGAGAAGAGCACCGGTAGCGGTGGGAAGAAGAAGGGTCCGGCGCAGCTTCGGGTTTACAATCTCGGGAACACTTCGCCGGTGCCGGTGGGGAAGCTGGTTTCGATCTTGGAGGGGTTGTTGAACACGAAGGCGAAGAAGCACATCTTAAAGATGCCGCGAAACGGCGACGTTCCGTACACGCACGCGAATGTGACGTTGGCTTTTAGGGATTTCGGGTACAAGCCCACCACCGATCTCGCCACCGGTCTCAGGAAGTTCGTGAAGTGGTACGTTCGTTATTACGGGATACAGCCAAGGGTAAAAAAGGAAAATCAACTTGACAATGAACAGCCCGAGGATTCCGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01369	25366	26745	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08679	E5.1.3.6	EC:5.1.3.6	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001369s00030289.1	PF01370.16	Epimerase	109	349	7.50E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	434.552
SRR1783600	control	437.199
SRR1783602	moderate drought stress	777.550
SRR1811619	moderate drought stress	783.954

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	360.995
DRR006520	Root Summer glycyrrhizin high producing strain	356.313
DRR006521	Root Winter glycyrrhizin high producing strain	1424.873
DRR006522	Root Winter glycyrrhizin high producing strain	1369.345
DRR006523	Root Summer glycyrrhizin low producing strain	445.303
DRR006524	Root Summer glycyrrhizin low producing strain	442.654
DRR006525	Leaf Summer glycyrrhizin high producing strain	192.776
DRR006526	Leaf Summer glycyrrhizin high producing strain	189.006

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	117.562
SRR2868004	Drought Stress (root)	134.802
SRR2967015	Control (root)	207.970

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	166.272
SRR9715740	Leaf	66.071
SRR9715741	Leaf	75.668
SRR9715739	Root	156.826
SRR9715742	Root	288.893
SRR9715743	Root	247.486

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	702.972
SRR8749028	MeJA induced 9h	1301.120
SRR8749029	MeJA induced 9h	696.962
SRR8749030	Uninduced	500.084
SRR8749031	Uninduced	146.016
SRR8749032	Uninduced	248.722

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	195.749
SRR8400027	Control - Root	238.759