Gene detail

Gene detail information of Glyur001369s00030287

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13850.3	2.00E-37	glycine-rich RNA-binding protein 2
NR	XP_004502236.1	5.32E-70	PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like [Cicer arietinum]
COG	YP_003267833.1	1.00E-27	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9SVM8\|RBG2_ARATH	9.00E-51	Glycine-rich RNA-binding protein 2, mitochondrial (Precursor)
trEMBL	tr\|P93486\|P93486_PEA	3.00E-70	Glycine-rich RNA-binding protein PsGRBP {ECO:0000313\|EMBL:AAB71417.1}

Sequence

Transcript Sequence

>Glyur001369s00030287.1
ACGACTACGAGTGTGATACTCGTTACTCTGAGCTTAAACCCTAGCCGCTTCACTCCTCTGTTTCGCAACTCCTTCAGGTTGAAATGGCATTCTGTAACAAAATCGGAAGCCTGTTGAGGCAGAGTGCTGCTCAGANCAACCAAGCACCTGTTTCATCCATGCTTAATTACATTCGCTGCATGTCTTCAAGCAAGCTTTTCGTTGGAGGACTTTCATATGGAGTTGATGATCAGTCTCTTAGGGATGCATTTGCAAGCTTTGGAGAAGTTGTTGAGGCAAGGGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTCGTCAACTTCACCAGTGATGAGCAAGCAAGTTGTGCCCTCTCTGCCATGGATGGACAGGATCTAAATGGGCGAAACATTCGGGTGTCCTACGCAAATGATAGACCTTCTGGACCTCGATCCCCTGGTGGCGGTGGCTATGGTGATGGTTTTTCCTCTCGTCGGGGTGGTGGTGGTGATGGTGGTTGGTGATCCAATCTTTTTATTCGATGTGCCTTCAGCNGATGTTTTGAGTTCTTATGGTTACGCCTAAAAATTTAATTACTGCTCAACTGTTCAATCAGTAATTAGCGGAATGTTATGACTTATCTCCATTTTTCGTTTGTTATTCTGTGTTATTAACCGAGCATTGGTTTCGATCTATTATTGTCTTCTGCATGTGTTAATTATCTTCCTGCCCCTGCCGCTTCCCTGGTTGGATTTCGAATTGATATTCAAGGTTCATTCTGTTTTTTACAAACTCCTANAGTAAATAATTGGATGGTTATATGGTTTCAATGACTTGCGCCAAAAACCACCCTTCTATGATAATTGCATGAGATAGTACTCCCTAAAAACTATTGATGAGCGTAACAATAGTTCCTGATTTGTGCTTAGGAGTTAGCTTTAATCTGCGTGCTTTGATTTTTAACTACACTTACTNTACCACTAACCTTATGAGTTTACACCACCTTCGTTATGGTTTCAAAAATGAGTTTACATCGCTTCCTCTTACTTTGCCATTGGCTTTGTCTCATAATGCTGTGCTGGATTTCTGAAGAAATTGTTTCCCTTATAATGCCTACGAGACAAGTGGTGTTCCCTAGGATAGACCAGCCTAAGCCACTCATCGCTAGGAAGTTGATGTTATAACTATCCATGGCCCCAACACCTCTCCCATTGTTAAAACTGTCATCTAGTGCTGCCACAGGATAGAATAGCTCTTCAATTGCCATTGTTCCGAGATCCAGTGATTCTNCTCCCCCGAGTCCAAGCGCAATTCCTCTTCTTCGGTCCAGTGTTGGAACTTGGAACCAGGGATGTTAAGGATCAAATTGGGTTGGTGGAAGATGAATGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01369	13055	15447	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001369s00030287.1	PF00076.17	RRM_1	38	108	7.90E-24
Glyur001369s00030287.2	PF00076.17	RRM_1	38	108	7.90E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	77.773
SRR1783600	control	77.836
SRR1783602	moderate drought stress	94.070
SRR1811619	moderate drought stress	92.882

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	224.567
DRR006520	Root Summer glycyrrhizin high producing strain	223.672
DRR006521	Root Winter glycyrrhizin high producing strain	208.914
DRR006522	Root Winter glycyrrhizin high producing strain	202.845
DRR006523	Root Summer glycyrrhizin low producing strain	305.335
DRR006524	Root Summer glycyrrhizin low producing strain	304.596
DRR006525	Leaf Summer glycyrrhizin high producing strain	73.410
DRR006526	Leaf Summer glycyrrhizin high producing strain	73.194

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	192.391
SRR2868004	Drought Stress (root)	130.548
SRR2967015	Control (root)	190.340

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.206
SRR9715740	Leaf	85.423
SRR9715741	Leaf	65.756
SRR9715739	Root	153.479
SRR9715742	Root	123.024
SRR9715743	Root	129.185

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	608.147
SRR8749028	MeJA induced 9h	311.735
SRR8749029	MeJA induced 9h	498.035
SRR8749030	Uninduced	78.444
SRR8749031	Uninduced	30.538
SRR8749032	Uninduced	89.592

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	151.148
SRR8400027	Control - Root	134.890