Gene detail information of Glyur001367s00035395 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78770.1 | 0 | anaphase promoting complex 6 |
| NR | XP_004514627.1 | 0 | PREDICTED: anaphase-promoting complex subunit 6-like [Cicer arietinum] |
| COG | YP_001839730.1 | 8.00E-13 | hypothetical protein LEPBI_I2363 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] |
| Swissprot | tr|B3DNN5|CDC16_ARATH | 0 | Anaphase-promoting complex subunit 6 |
| trEMBL | tr|I1KDK4|I1KDK4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G32850.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01367 | 30091 | 46830 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001367s00035395.1 | PF12895.2 | Apc3 | 19 | 97 | 4.10E-17 |
| Glyur001367s00035395.1 | PF07719.12 | TPR_2 | 132 | 161 | 0.0033 |
| Glyur001367s00035395.1 | PF13414.1 | TPR_11 | 369 | 426 | 1.50E-06 |
| Glyur001367s00035395.1 | PF13414.1 | TPR_11 | 440 | 498 | 5.90E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.114 |
| SRR1783600 | control | 7.796 |
| SRR1783602 | moderate drought stress | 12.761 |
| SRR1811619 | moderate drought stress | 12.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.387 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.963 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.628 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.877 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.198 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.286 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.088 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.302 |
| SRR2868004 | Drought Stress (root) | 9.014 |
| SRR2967015 | Control (root) | 9.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.343 |
| SRR9715740 | Leaf | 2.427 |
| SRR9715741 | Leaf | 3.407 |
| SRR9715739 | Root | 6.951 |
| SRR9715742 | Root | 13.564 |
| SRR9715743 | Root | 15.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.769 |
| SRR8749028 | MeJA induced 9h | 12.781 |
| SRR8749029 | MeJA induced 9h | 14.017 |
| SRR8749030 | Uninduced | 3.501 |
| SRR8749031 | Uninduced | 3.650 |
| SRR8749032 | Uninduced | 2.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.672 |
| SRR8400027 | Control - Root | 20.266 |