Gene detail

Gene detail information of Glyur001366s00034402

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G44350.1	2.00E-55	IAA-leucine resistant (ILR)-like gene 6
NR	XP_003602066.1	3.93E-95	IAA-amino acid hydrolase ILR1-like protein [Medicago truncatula]
COG	YP_003120997.1	5.00E-31	amidohydrolase [Chitinophaga pinensis DSM 2588]
Swissprot	tr\|Q8VYX0\|ILL6_ARATH	5.00E-67	IAA-amino acid hydrolase ILR1-like 6 (Precursor)
trEMBL	tr\|Q0GXX3\|Q0GXX3_MEDTR	1.00E-95	IAA-amino acid hydrolase ILR1-like protein {ECO:0000313\|EMBL:AES72317.1}

Sequence

Transcript Sequence

>Glyur001366s00034402.1
ACTTGGGGATCAAAATGACATAGTTAAAAACTAAAGAACCAAAATTATACAATCATTAATACATGAAGGANTAAAAGTACAATTAAACTAAAAAAAGAAAAAGAGTAAACGGGGAATATTTACTTTTTTAAAAAAAAATAGAGCGCGTGTACATCCATCTCAGTGGAAAGCCGTGATGTAAAGAAAGTGGTNGGGACCGCCCATCTCTCCAACTCTCGCGATTCCACGACTTGCTAGAATGCTAGCTACTCACAGTCATCCCATGTAGTCACATGTAGTCACATTTACTTCCGTGTTGTACCCACGTGCTCCAATTCTCTAACTGCCATCGTCAAATCGTCAAAATAAAAAAACACAAAACAAAACAAAAACTCTCTCTCTCCTAATTTTTTAAACTTTTTTTATCCCCACGTGTTTAAATTCTCCTCTTCCCTTCTTCCTTTTTCTATCCCTCTCTCCCATCCTTTCCTCTCTGTGCTATTTCCTCTCTCTCTCTGCTTTGTTCCAGCTGCCAAAAAAAGAAAAAGANAAAAACAGAAGAAGAAGATGAGAATCCGCACCTCTTCGTTTTTCTCAGCGATCGTATTCTTATTAACCGCTCTGATTCTAGAAGATTCCGCGGTTTGTATACCTTCCGCCGCTTACGACGGCGGCTTGTTGTTCCCCGACCGTAGATGCTCCTGCGATCGGGAACAGAGCAAGAACGCGACGCGGCGGGGGACTCCGGCTCCGGCGGCGCCGTCGTACTGCGAGGCGTGGAGCGAGGCGTGTTCGGAGGCGGTTCTGAGCGTGGCGNGGCTGCCGGAGACTCTGGAGTGGTTGAAGAGGGTTCGGAGGAGGATCCACGAGAATCCTGAGCTTGCTTTTGAGGAAATCGAAACGAGTCGTTTGGTAAGGGAAGAGTTGGATCTGATGGAAGTTAGTTACAAGTACCCACTCGCTAAGACCGGTATTCGAGCCACGATCGGAACCGGTGGCCCGCCTTTTGTTGCAATTAGAGCTGACATGGATGCTCTTCCCATTCAGGAAGCTGTGGAGTGGGAGTACAAGTCTAAAGTTGCCGGCAAAATGCACGCTTGTGGGCACGACGCACATGTGGCGATGCTTATTGGTGCTGCCAAGATCTTGAAAACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01366	61555	63467	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001366s00034402.1	PF01546.23	Peptidase_M20	149	195	5.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.394
SRR1783600	control	4.431
SRR1783602	moderate drought stress	4.223
SRR1811619	moderate drought stress	4.194

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.011
DRR006520	Root Summer glycyrrhizin high producing strain	11.433
DRR006521	Root Winter glycyrrhizin high producing strain	7.937
DRR006522	Root Winter glycyrrhizin high producing strain	7.451
DRR006523	Root Summer glycyrrhizin low producing strain	7.661
DRR006524	Root Summer glycyrrhizin low producing strain	7.870
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.727
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.711

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.750
SRR2868004	Drought Stress (root)	23.289
SRR2967015	Control (root)	37.241

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.820
SRR9715740	Leaf	2.251
SRR9715741	Leaf	18.433
SRR9715739	Root	15.613
SRR9715742	Root	28.493
SRR9715743	Root	26.537

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.657
SRR8749028	MeJA induced 9h	1.320
SRR8749029	MeJA induced 9h	0.244
SRR8749030	Uninduced	8.521
SRR8749031	Uninduced	5.618
SRR8749032	Uninduced	11.530

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.205
SRR8400027	Control - Root	28.396