Gene detail

Gene detail information of Glyur001366s00034400.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69740.2	3.00E-170	Aldolase superfamily protein
NR	XP_011027511.1	0	PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
COG	YP_007045970.1	7.00E-133	delta-aminolevulinic acid dehydratase [Cyanobium gracile PCC 6307]
Swissprot	tr\|P43210\|HEM2_SOYBN	0	Delta-aminolevulinic acid dehydratase, chloroplastic (Precursor)
trEMBL	tr\|V5N8K3\|V5N8K3_PHAVU	0	Delta-aminolevulinic acid dehydratase {ECO:0000256\|RuleBase:RU000515}

Sequence

Transcript Sequence

>Glyur001366s00034400.1
AACTCTCCTCTCATTGGTTCTCTTTATTTCCCTTTCCCAATCTCATCACTATTGCTCCTTCTCTCCTGCGAAACCAAATCTCCGATCCCAATCCAATTGGGTTTGCGTTTTTCTTTTTTCTTCATTGTTCACTCAATTTCTAATCTTAAAGGTTACAAATTTTGTATTTTTCATGGCTTCTTCTTCGACGATAATTCCGAACGCACCCTACGTTGGTCTGAGAGCACCAACGACGACGAAGGGGAAGAAGAATTCGAACAACTGCTATTGTCCAACCACGTGTCGTCGTCCTCCGCGTCTCTTTACCGTGAGAGCCTGCGACTCGGAATTCGAGGCCGCCGTTGTCGCCGGAAAAGTGCCGGAGGCGCCACCCGTTCCTCCTAAGCCGGCGGCGCCAGCTGGAACACCGGTGGTCCCTTCACTTCCACTTCATAGGCGTCCTCGTCGTAACAGGCAGTCACCTGCACTTCGATCAGCTTTTCAGGAAACTAATATATCACCTGCCAATTTTGAGGACACCCCAATTGGGGCTATGCCTGGATGCTACAGGCTTGGTTGGAGACATGGACTTTTGGAAGAGGTTGCAAAAGCACGGGATGTTGGTGTTAATAGTGTTGTGCTCTTCCCCAAAATTCCAGATGCTTTGAAGTCTCCCACAGCAGATGAAGCATACAATGAGAATGGTTTAGTGCCTCGGTCAATCCGTATGCTCAAGGATAAGTACCCTGATCTTGTTGTTTATACAGATGTTGCATTAGATCCTTATTCCTCAGATGGGCATGACGGCATAGTTAGAGAAGATGGAGTCATTATGAATGATGAGACAGTTCATCAACTTTGTAAACAGGCTGTAGCCCAGGCCCGAGCTGGAGCAGATGTTATCAGTCCNAGTGATATGATGGATGGCCGGGTAGGAGCAATACGATCAGCTCTCGATGCTGAAGGCTTTCAGCATGTTTCTATAATGTCATATACAGCAAAGTATGCAAGTGCATTTTATGGTCCATTTAGAGAAGCACTGGACTCAAACCCCCGGTTTGGTGACAAGAAGACTTATCAGATGAACCCAGCAAATTACAGAGAGGCTTTGACTGAGATGCGGGAAGATGAATCTGAAGGAGCTGATATTCTCTTGGTGAAGCCTGGTCTTCCTTATTTGGATATCATAAGGCTGCTTAGGGATAGTTCTCCATTACCAGTTGCAGCATATCAGGTTTCTGGTGAATACTCAATGATAAAAGCTGGTGGTGCTCTCAAAATGGTTGACGAAGAAAAAGTTATGATGGAGTCATTATTGTGCCTCCGGCGGGCCGGTGCTGACATCATCCTTACATATTTTGCTCTACAAGCTGCCAGATATTTGTGTGGAGAGAAGAGGTGAGATTCTTTAAATATTTAAGGGCATTTTTCATTGTAGAAGGTCGAAGAGGAGCTCAAAGCATTTGCCAGTATGCAGAAAAATTATGCTGGAATTTTTTCTTTTAAAATGCTTTGCTTGGTTGGTTGTTGCCGCTGTTTACGTGTCATTGTCAACCCANTATTATTGTATAAACGATAGAATACACTCAAACCTGCAGAATAATTCGTACTGTAATGTATTTGTGCTGAAATGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01366	40318	48084	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01698	hemB, ALAD	EC:4.2.1.24	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process
GO:0033014 tetrapyrrole biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0004655 porphobilinogen synthase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001366s00034400.1	PF00490.16	ALAD	87	397	7.90E-130

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.068
SRR1783600	control	40.454
SRR1783602	moderate drought stress	29.156
SRR1811619	moderate drought stress	28.969

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.583
DRR006520	Root Summer glycyrrhizin high producing strain	41.462
DRR006521	Root Winter glycyrrhizin high producing strain	24.746
DRR006522	Root Winter glycyrrhizin high producing strain	24.085
DRR006523	Root Summer glycyrrhizin low producing strain	27.379
DRR006524	Root Summer glycyrrhizin low producing strain	29.602
DRR006525	Leaf Summer glycyrrhizin high producing strain	83.606
DRR006526	Leaf Summer glycyrrhizin high producing strain	83.188

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.254
SRR2868004	Drought Stress (root)	32.895
SRR2967015	Control (root)	31.776

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	109.003
SRR9715740	Leaf	115.377
SRR9715741	Leaf	98.126
SRR9715739	Root	30.921
SRR9715742	Root	35.475
SRR9715743	Root	33.749

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.127
SRR8749028	MeJA induced 9h	43.591
SRR8749029	MeJA induced 9h	40.514
SRR8749030	Uninduced	66.580
SRR8749031	Uninduced	53.147
SRR8749032	Uninduced	58.853

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.929
SRR8400027	Control - Root	53.840