Gene detail information of Glyur001364s00040360 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G60660.1 | 1.00E-85 | |
| NR | XP_004516030.1 | 1.04E-148 | PREDICTED: spindle and kinetochore-associated protein 1 homolog [Cicer arietinum] |
| Swissprot | tr|Q9LZZ7|SKA1_ARATH | 4.00E-116 | Spindle and kinetochore-associated protein 1 homolog |
| trEMBL | tr|I1J7S3|I1J7S3_SOYBN | 4.00E-145 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G33340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01364 | 30035 | 32763 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001364s00040360.1 | PF07160.7 | DUF1395 | 20 | 77 | 3.00E-13 |
| Glyur001364s00040360.1 | PF07160.7 | DUF1395 | 103 | 276 | 3.80E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.379 |
| SRR1783600 | control | 10.896 |
| SRR1783602 | moderate drought stress | 7.040 |
| SRR1811619 | moderate drought stress | 6.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.381 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.112 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.796 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.623 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.466 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.492 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.981 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.914 |
| SRR2868004 | Drought Stress (root) | 2.572 |
| SRR2967015 | Control (root) | 3.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.623 |
| SRR9715740 | Leaf | 0.887 |
| SRR9715741 | Leaf | 1.293 |
| SRR9715739 | Root | 0.518 |
| SRR9715742 | Root | 1.549 |
| SRR9715743 | Root | 1.635 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.313 |
| SRR8749028 | MeJA induced 9h | 18.342 |
| SRR8749029 | MeJA induced 9h | 19.271 |
| SRR8749030 | Uninduced | 10.518 |
| SRR8749031 | Uninduced | 7.329 |
| SRR8749032 | Uninduced | 6.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.012 |
| SRR8400027 | Control - Root | 7.323 |