Gene detail

Gene detail information of Glyur001363s00029396

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	2.00E-114	NB-ARC domain-containing disease resistance protein
NR	AES95654.2	0	disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]
COG	YP_007058022.1	5.00E-11	hypothetical protein Riv7116_5077 [Rivularia sp. PCC 7116]
Swissprot	tr\|Q39214\|RPM1_ARATH	2.00E-146	Disease resistance protein RPM1
trEMBL	tr\|G7K9J5\|G7K9J5_MEDTR	0	Disease resistance protein (CC-NBS-LRR class) family protein {ECO:0000313\|EMBL:AES95654.2}

Sequence

Transcript Sequence

>Glyur001363s00029396.1
TGGGTAAACGCTTCAGAAATAGTTTAATATTACTTTTCGTTGAACTTACTCACTTTTGCCGTATATTACGCTTCATTTCCATTCAGACAATTAGTTATCTACTTGTGATGGTGTCCTATTTCAATTTTTGTTGAGGAGAAAAGTCGTGCATCTCTAACCCCTGTCTTACTTGTAAATTGGNGTGAATAACACTTCATTTCCTTGGTGGCATCACAGTGTCCCAGTTCTGGAGAATAATATCAACAATAAATGTCCCTCGTAATAAATTATCCAAAGAGTGTCTTATATAGCTATGAGAAACAAGAAAGCAAAGCACTATATAGCTAGCAAGTCTATAAACAAAATCTACTTGGCGAAGCAAAAGCCCCTCTCTACTAGTCTGCCATGGACTTGCAGAGGGTATTTTGACTAATCTAGAAAGAAACTAAGAGATCATGGCAGAGAGTGCNGTGAATTTTCTTCTCCAAAGGCTTGCGCCTGTATTTCAGAATAAGGTGAATTTGCTCACCGGGGTTCAAGCAGAAGTGGTTTATCTGAAAGGGCAGTTGGAGCCCATAAGAGCCTTCTTAAGGGTAGCAGATGCATTAGAAGAAAGCGATGAGGAACTAAAAGTTTGGGTTAAGCAAGTNAGAGACGTTGCTCACGAGACTGAAGATCTTCTTGATGAATTGGAACTTGTCCAGGCANGTAACCACACAAGTGGGTTCTCTATTTCTCTCCGTGTCCGGAACATGAAAGCTCGTTATCGAATTGCTTATGGGTTGAAAAGCATCAACTCTCGCATGGCAACTATTTTTTCAAATCATAAGAGATTCCTCAGAAAACTTGACACTGCCTCAGAGGCTTCAAATTCCATTTATACAGGTAAAACATGGCATGATCAACGAGGAGATGCCCTTCTCCTGGACAACACTGATGTTGTGGGCATAGACATGCCTAAAAGGCAGTTGATCGGGTGGTTGATTAAAGGTTGTCCTGGACGCAAAGTGATTTCTGTTACCGGAATGGGAGGGATGGGAAAAACAACCTTGGTGAAGAAAGTATATGATGATCCAGAGGTGATAAAACACTTCAAAGTATGTGCTTGGGTTACTGTTTCTCAATCTTGTGAAATTGAGGAGCTTCTCAGAGACTTGGCCCAGAAACTTTTTTCTGAAATAAGAAGACCAGTTCCAGAAGGCTTGGAAAGCATGCATAGTGATAAGCTGAAGATGATTATTAAAGACCTGTTGCAGAGGAGGAGGTACCTAGTCGTATTTGATGATGTGTGGCATATGCATGAATGGGAAGCTGTCAAATATGCATTGCCAAACAATAATTGTGGCAGCAGGATCATGATCACCACACGCAGATCTGACTTAGCCTTTACTTCCAGCATAGAATCCAAAGGTAAGATGTATAACCTACAACCCTTGACAGAAGATGAAGCTTGGGAACTATTTTGTAGAAAGACTTTCCAGGGTCACTCATGCCCCTCATATTTGATTGACATCTGTAAATACATCTTAAGAAAATGTGAGGGTCTGCCACTTGCAATTGTGGCAATCAGTGGTGTCCTGGCTACAAAAGACAAGCGCAGGATAGATGAGTGGGATATGATTTGCCGTACTCTTGGAGCTGAAATTCANGTCAATGGCAAACTTGACAATTTGAAAACAGTACTTTGCCTCAGTTTTAATGATTTGCCTTACTATTTAAAGTACTGTTTCTTGTACCTAAGCATATTTCCTGAGGACTATCTGATTCAGCGCATGAGGTTGATTCGCTTGTGGATAGCAGAAGGATTCATTGAAGCCAAAGAAGGAAAAACAATTGAAGATGTTGCAGAGGATTACCTCAAGGAGCTCCTGAACAGAAACTTGATACAAGTAGCTGAGACAACATCTGATGGAAGGGTCAAAACTTTGCGAGTCCATGATCTTCTGCGGGAGATCATCATCATGAAGTCTAAGGACCAAAAGTTTGCAACCATTGTCAAAGAACAAAATGTGGCATGGCCTGAAAAGATTAGGCGCCTTTCATTGCACAGCGCATTACCAAATGGACAGCAACAGAGATCAGTTTCTCAACTCCGTTCTCTCTTAATGTTTGGGGTGGCTGGAGCTTTATCCCTAGGCAAACTGTTTCCTGGAGGATTCAAACTGCTAAGTGTTCTAGATTTTCAAGATACACCTTTGAAGAAGTTCCCAGTAGCAGTTGTCGACCTATATCATTTAAGATATCTAAGCTTGAGGAATACACAGGTGAGAATGATTCCAGGTCGTATACTAGGGAAGCTGCAGAATCTAGAAACATTGGATCTTAAGAACACTTTTGTTACAGAATTGCCTGCAGATATACTGAAGCTTAAAAAGCTTCGCCACCTCCTTGNATACCAGTTTAAAGTCAAAGGTTATGCACAATTCTACTCCAAATGTGGTTTTAAGTGCCCCTCTGAGATAGGAAATTTACAGTCACTACAAAAGCTTTGTTTTGTGGAGGCAAATCAAGGCTGTGGTATGATAATAAGGCAGTTAAGGGAGCTAACCCAACTAAGAAGGTTAGGCATCACGAAACTCAGAGAGGAAGATGGGAAGGCTTTCTGTTTGTCCATTGAGAGATTGACTAATCTCCATGCCCTCTCGGTTACTTCTGAGGGGGAGAATAAGCTCATTGATCTGACACTCCTTTCTTCACCCCCTCCATTTCTTCAACGCTTGTATTTGTCAGGGCGTCTACAAGAGTTACCAAGTTGGATACCATCTCTTCATAGCCTGGCCAGGTTATTTCTGAAATGGAGCTGCTTGAAACATGATCCACTAGCATATCTGCAGGATTTGCCAAACCTTTCACATCTCGAGCTACTTCAAGTTTATGATGGGGACACATTGCATTTTAGGTGTGGGAAGTTCAAGAAGCTCAAGGTTTTAGGCCTTGACAAATTTGATGGGCTCAATCAGGTGATAGTGGGGAAGGGTGCAATGCCTTGCCTAGAAACACTGAGCATTGGGCGTTGCGAATCGCTGAAGAAGGTGCCATCAGGCATTGAACACTTGACTAAGCTGAAACTCCTAGAGTTTTTTGACATGCCAGATGAACTGACGAAGAGAATATGCCCACACGGTCCGGGAAAAGATTACTGGAAAGTTTCACATATAGCAGAGGTGTATTCTACCTACTCGACAGATGGTGGCTGGGATGTTTATGCACTAGACAGTTTCAGAGACTGTTCTCCACGATCAGGCACAGTCATGAGAAGTCATGAACGCCGCACTCCGTGGAAGGTGTAGCTTTAAATTGTAAAATAACAGAATGTATATAGTCATTTGTGTATATCACCTAAATTGTATATGAAAAAATTGAGCTGACTCGTTTCCTGTACACAAGTCAGCACTCTAAATAAAGGTGTAGGTTTTAATTCACCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01363	43439	47408	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006426 glycyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0004820 glycine-tRNA ligase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001363s00029396.1	PF00931.17	NB-ARC	168	455	2.70E-75
Glyur001363s00029396.1	PF13855.1	LRR_8	593	644	5.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.854
SRR1783600	control	0.849
SRR1783602	moderate drought stress	1.754
SRR1811619	moderate drought stress	1.752

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.565
DRR006520	Root Summer glycyrrhizin high producing strain	2.516
DRR006521	Root Winter glycyrrhizin high producing strain	0.786
DRR006522	Root Winter glycyrrhizin high producing strain	0.741
DRR006523	Root Summer glycyrrhizin low producing strain	1.633
DRR006524	Root Summer glycyrrhizin low producing strain	1.656
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.126
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.046

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.497
SRR2868004	Drought Stress (root)	11.731
SRR2967015	Control (root)	12.566

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.064
SRR9715740	Leaf	9.338
SRR9715741	Leaf	11.050
SRR9715739	Root	0.459
SRR9715742	Root	1.043
SRR9715743	Root	1.041

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.712
SRR8749028	MeJA induced 9h	8.915
SRR8749029	MeJA induced 9h	3.540
SRR8749030	Uninduced	6.462
SRR8749031	Uninduced	4.398
SRR8749032	Uninduced	2.319

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.818
SRR8400027	Control - Root	2.711