Gene detail

Gene detail information of Glyur001363s00029395

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	2.00E-112	NB-ARC domain-containing disease resistance protein
NR	XP_004512454.1	0	PREDICTED: disease resistance protein RPM1-like [Cicer arietinum]
COG	YP_001516367.1	1.00E-12	hypothetical protein AM1_2038 [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q39214\|RPM1_ARATH	8.00E-149	Disease resistance protein RPM1
trEMBL	tr\|V5UNU9\|V5UNU9_CICAR	0	CC-NBS-LRR disease resistance protein {ECO:0000313\|EMBL:AHB79186.1}

Sequence

Transcript Sequence

>Glyur001363s00029395.1
ATGGCAGATAGTCCAGTATCGTTTTTATTGGACAAGCTGACTTCGTTACTTCAAGAAGAAGTGAATTTGCAAAGAGGGGTNCGTGAAGATGTTCAGTACATCAAAGATGAACTGGAACGCCACAAGGCCATCTTGATGGTGGCTGATGCACTGGAAGACAAAGACCCTGAACTCAAAGTATGGTTTAAACGAGTGAGAGATATTGCTTATGACATGGAAGATGCTATAGATGAATACAATCTTCGCCTTGTTGATCAACATGGACAAGGCAACGGTTCTTCTCTTCACAAGATTGTCTTTGCCTTTAAGACCATGAAAGCTAGGCACCGGATAGCTTCACATATACAAGGCATCAAATCCAAAGTTGAAGTTATCTCCCAGGGACGTCCCAGCATATCTGGGGTAGGCTCAAGCTCGAGTCAAAGGTGGTTGTCATCAAGGCTTGATAGCCAAGATGATGCCCTTTTGTTAGACGAAGCTGATCTGGTGGGAATTGAACAACCCAAGAAGCAGGTGAGCGATTTGCTGCTTTTCAAGGATGAAGCTGGTCGGGCTGTGATTTCCATCTATGGAATGGGAGGGTTGGGGAAAACCACACTGGCAAAACAAGTCTATGATGATCCAAAAGTGAAGAAGCGTTTCAGGATTCATGCTTGGATCAATGTTTCTCAATCCTTCAAGATGGAAGAGCTCCTGAAGGACCTTGTTCAACAGCTCCATAATGTCATTGGCAAACCAGCTCCAGAAGCAGTTGGACAAATGAAAAGTGACAAGCTGAAAGAGTTGATCAAGAATTTGCTTCAGCAAAGCAGGTACCTCATTGTGCTGGATGATGTGTGGCATGTAAATGTCTGGGATGCTGTCAAGCTTGCTTTGCCTACTAACAACCGTGGCAGTAGAGTGATGCTTACCACACGCAAGAAAGATATAGCCTTGTATTCTTGCGCCGAATTGGGTAAGGACTTTCACCTTGAGTTCTTGCCTGAGCAAGAAGCTTGGTCTCTTTTTTGTAGGAAGACATTTCAGGGTAACCCATGCCCTCCTCATCTGGAAGAAGTTTGCCGTAACATCTTAAAAATGTGTGGAGGGTTGCCTNTAGCAATTGTGGCAATCAGTGGTGCTTTGGCTACAAGAGGCAGGACAGACATAGAAGAGTGGCAGATGGTTTGCAAGAGTTTTGGGTATGAAATTGAAGGCAATGACAAACTNGAGGTCATCAAGAAAGTGCTTTCCCTAAGTTTCAATGAATTACCTTACTATCTTAAATCCTGTTTGTTGTACTTGAGCATCTTTCCAGACTTTCATGCTATTGAGCATATGAGATTGATTCGCTTGTGGATAGCTGAAGGGTTTATCAATGGAGAAGATGGAAAGACACCTGAGGAAGTTGCAGACAGTTACCTCAAGGAGCTCTTGAACAGAAGTCTGTTGCAAGTGGTAGAAAAAACCAGTGATGGCAGGATGAGGACTTGTCGCATGCATGACCTTGTAAGGGAGATTGTCAATTTGAAGTCAAGGGATCAGAACATTGCAACAATAGCCAAGGAACAAGACATGGTGTGGCCAGACAGAGTTCGACGCTTATCAGTCATAAACTCATCGCATAATGTACAACAAAATAAGACCACATTCCAACTTCGATCTCTGCTAATGTTTGCCTTATCAGATTCACTGGATCATTTTTCTATACGTGAATTATGCTCCACTGGCTATAAGTTACTCCAGNTGTTAGACTTGCAGGATGCACCTTTGGAGGTTTTTCCTGCTGAAATTGTCAACCTTTACCTTCTGAAGTATCTAAGTTTGAAGAATACAAAGGTGAGAAACATTCCAAGTTCCATTAAGAAGCTGCTATACCTGGAGACATTGGATCTTAAACACTCTTATGTCACTGAATTGCCAGTTGAAATTGTGGAGCTGCAACGATTACGCCATCTCCTGGTGTATCGCTATGAGATTGAATCCTATGCTCATTTCCATTCAAGNCATGGCTTCAAGGTAGCTGCCCCTATAGGATGCATGCAATCTTTGCAAAAGCTATGTTTTATAGAGGCAGACCAAGGAAGTAAAGCCTTGATGATTGAGCTAGGAAAACTTACTCAACTTAGGAGGCTAGGCATAAGAAAAATGAGGCAAGAAGATGGGCCTGCTTTGTGTTCATCCATTGAGAAGATGATCAATCTTCGATCACTTTCCATAACTGCAATTGAAGATGATGAGATAATTGATATTCATGACATTTCCAGGCCTCCTCAGTATCTTCAGCAGTTATACTTGAGTGGACGTTTGGAAAAGTTTCCCCACTGGATAAGTTCTCTCAAGAACTTGGTCCGAGTGTTTCTGAAATGGAGCCGNTTAAAGGAGGACCCTCTGGTGCATCTTCAAGATTTGCCAAATCTGAGACATCTTGAGTTTCTTGAAGTTTATGTCGGCGAGACATTGCATTTCAAGGCTAACACGTTTCCTAGTCTGAAGGTGTTAGGCCTTGATGATTTAGATGGACTGAAATCTATGATAATGGAGGAGGGAGCAATGCCAGGTCTTAAAAAGCTGATCNTCCAGCGGTGTGGTTCATTCAAGCAAGTACCATTAGGCATTGAACACCTAACTAAGCTAAAAACAATTGAGTTTTTTGATATGCCTGAAGAATTGATTATGGCACTGCGTCCAAATGGAGGCGAAGATTACTGGAGAGTACAACATGTTCCAGCAGTTTACTCCTCATATTGGAGGGATGGTGGTTGGGATGTCTACTCATTAGAGACTTTTGGGGAGCGGGAGAGTGATTCCAGTCGAAGTACTGCAACAAGAAGTCTTGAGCTTTGCACTCTCTGGAAGGTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01363	36840	39683	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001363s00029395.1	PF00931.17	NB-ARC	167	456	1.50E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.305
SRR1783600	control	0.269
SRR1783602	moderate drought stress	0.470
SRR1811619	moderate drought stress	0.484

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.054
DRR006520	Root Summer glycyrrhizin high producing strain	2.770
DRR006521	Root Winter glycyrrhizin high producing strain	0.588
DRR006522	Root Winter glycyrrhizin high producing strain	0.544
DRR006523	Root Summer glycyrrhizin low producing strain	2.429
DRR006524	Root Summer glycyrrhizin low producing strain	2.511
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.831
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.880

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.807
SRR2868004	Drought Stress (root)	9.934
SRR2967015	Control (root)	13.243

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.490
SRR9715740	Leaf	52.065
SRR9715741	Leaf	38.892
SRR9715739	Root	0.174
SRR9715742	Root	0.525
SRR9715743	Root	0.511

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.816
SRR8749028	MeJA induced 9h	115.270
SRR8749029	MeJA induced 9h	67.145
SRR8749030	Uninduced	127.826
SRR8749031	Uninduced	92.560
SRR8749032	Uninduced	54.429

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.748
SRR8400027	Control - Root	0.291