Gene detail information of Glyur001363s00029391 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32090.1 | 0 | early-responsive to dehydration stress protein (ERD4) |
| NR | XP_004512449.1 | 0 | PREDICTED: uncharacterized membrane protein C2G11.09-like [Cicer arietinum] |
| Swissprot | tr|Q9FVQ5|CSCL1_ARATH | 0 | CSC1-like protein At1g32090 |
| trEMBL | tr|G7K880|G7K880_MEDTR | 0 | ERD (Early-responsive to dehydration stress) family protein {ECO:0000313|EMBL:AES95620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01363 | 1556 | 11370 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001363s00029391.1 | PF13967.1 | RSN1_TM | 7 | 156 | 3.00E-31 |
| Glyur001363s00029391.1 | PF13967.1 | RSN1_TM | 156 | 230 | 8.60E-15 |
| Glyur001363s00029391.1 | PF14703.1 | DUF4463 | 290 | 352 | 2.00E-14 |
| Glyur001363s00029391.1 | PF02714.10 | DUF221 | 373 | 696 | 2.20E-100 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.647 |
| SRR1783600 | control | 14.463 |
| SRR1783602 | moderate drought stress | 5.658 |
| SRR1811619 | moderate drought stress | 5.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.943 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.007 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.315 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.318 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.329 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.807 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.875 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.002 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.191 |
| SRR2868004 | Drought Stress (root) | 7.004 |
| SRR2967015 | Control (root) | 7.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.100 |
| SRR9715740 | Leaf | 0.479 |
| SRR9715741 | Leaf | 0.779 |
| SRR9715739 | Root | 4.448 |
| SRR9715742 | Root | 5.274 |
| SRR9715743 | Root | 4.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.566 |
| SRR8749028 | MeJA induced 9h | 13.178 |
| SRR8749029 | MeJA induced 9h | 9.600 |
| SRR8749030 | Uninduced | 6.480 |
| SRR8749031 | Uninduced | 3.887 |
| SRR8749032 | Uninduced | 3.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.648 |
| SRR8400027 | Control - Root | 22.613 |