Gene detail

Gene detail information of Glyur001362s00038904

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38290.1	0	ammonium transporter 2
NR	AAL08212.1	0	putative ammonium transporter AMT2 [Lotus japonicus]
COG	YP_006765569.1	4.00E-165	ammonium transporter [Leptospirillum ferriphilum ML-04]
Swissprot	tr\|Q84KJ6\|AMT31_ORYSJ	0	Ammonium transporter 3 member 1
trEMBL	tr\|Q93X02\|Q93X02_LOTJA	0	Putative ammonium transporter AMT2 {ECO:0000313\|EMBL:AAL08212.1}

Sequence

Transcript Sequence

>Glyur001362s00038904.1
ATGGCAACTCCAACAGCATACCAAGAACACCTCCCAGCATCACCACAATGGCTAAACAAAGGGGACAACGCATGGCAAATGATAGCAGCAACACTTGTTGGTCTTCAAAGCATGCCAGGACTAGTGATCCTCTATGCAAGCATAGTCAAAAAGAAATGGGCAGTGAACTCTGCTTTCATGGCCCTTTATGCCTATGCAGCCGTCTTAATCTGTTGGGTCCTGGTTTGTTATCGTATGGCATTTGGGGATAAACTCCTTCCATTTTGGGGTAAAGGTGCACCTGCACTTGGCCAAAAGTTCCTCATAAACCAAGCCAAAGTTCCTGAAAGCACACACTACTACAAGAATGGTACTATGGAAACCCCTGAGACAGAACCCTTTTATCCCATGGCTTCTCTTGTTTATTTTCAGTTCAATTTTGCTGCTATTACCATGATCTTATTAGCTGGGTCTGTACTTGGAAGGATGAATATTAAGGCTTGGATGGCTTTTGTCCCTCTTTGGCTCATCTTTTCTTATACTGTCGGTGCCTTCAGCATCTGGGGTGGTGGATTTTTATACCACTGGGGTGTCATCGATTTCTCTGGTGGCTATGTCATCCACCTTTCCTCTGGAATCGCTGGCTTCACTGCCGCTTACTGGGTTGGGCCAAGGTTGAAGAGTGACAGGGAGAGGTTCCCACCAAACAACGTGCTGCTGATGCTAGCAGGGGCAGGGTTGTTGTGGATGGGGTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCAAACATTGACTCTTCTATTGCTGTGCTCAACACTAACATATGTGCTGCCACTAGTCTCCTTGTGTGGACCTCTCTCGATGTTGTCTTCTTCGGCAAGCCTTCAGTGATAGGTGCTGTTCAGGACCAATATTTCATAATGGCAACTCCAACAGCATACCAAGAACACCTCCCAGCATCACCACAATGGCTAAACAAAGGGGACAACGCATGGCAAATGATAGCAGCAACACTTGTTGGTCTTCAAAGCATGCCAGGACTAGTGATCCTCTATGCAAGCATAGTCAAAAAGAAATGGGCAGTGAACTCTGCTTTCATGGCCCTTTATGCCTATGCAGCCGTCTTAATCTGTTGGGTCCTGGTTTGTTATCGTATGGCATTTGGGGATAAACTCCTTCCATTTTGGGGTAAAGGTGCACCTGCACTTGGCCAAAAGTTCCTCATAAACCAAGCCAAAGTTCCTGAAAGCACACACTACTACAAGAATGGTACTATGGAAACCCCTGAGACAGAACCCTTTTATCCCATGGCTTCTCTTGTTTATTTTCAGTTCAATTTTGCTGCTATTACCATGATCTTATTAGCTGGGTCTGTACTTGGAAGGATGAATATTAAGGCTTGGATGGCTTTTGTCCCTCTTTGGCTCATCTTTTCTTATACTGTCGGTGCCTTCAGCATCTGGGGTGGTGGATTTTTATACCACTGGGGTGTCATCGATTTCTCTGGTGGCTATGTCATCCACCTTTCCTCTGGAATCGCTGGCTTCACTGCCGCTTACTGGGTTGGGCCAAGGTTGAAGAGTGACAGGGAGAGGTTCCCACCAAACAACGTGCTGCTGATGCTAGCAGGGGCAGGGTTGTTGTGGATGGGGTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCAAACATTGACTCTTCTATTGCTGTGCTCAACACTAACATATGTGCTGCCACTAGTCTCCTTGTGTGGACCTCTCTCGATGTTGTCTTCTTCGGCAAGCCTTCAGTGATAGGTGCTGTTCAGGGACTTGTGCAATCGTGGGCGGCTATAGTGATGGGAATACTGTCTGGGAGCATTCCATGGGTGTCCATGATGATCCTCCACAAGAAGTCAAGTCTTCTACAAAAGGTAGATGACACCCTTGGAGTGTTTCACACACATGCAGTGGCTGGCCTTTTGGGGGGCCTCCTCACAGGTCTCTTAGCAGAGCCAGCTCTTTGTAGACTCATATTGCCGGTGACTAACTCAAGGGGTGCCTTCTACGGTGGTAGCGGCGGTGTGCAGTTTTTGAAGCAAATGGTGGCTGCACTCTTTGTTATTGGATGGAACTTGGTCTCCACCACACTCATTCTTCTCGCCATACAATTGTTCATACCCTTGAGGATNCCGGTTGACCAGCTAGAGATNGGCGATGATGCCGTCCATGGCGAGGAAGCTTATGCCCTTTGGGGGGATGGAGAAAAATATGATCCAACCAAGCATGGATCCTCAAAAAAAGAGGATGAAATTGCAACATCACAGGCTATTGGAGCAAGGAGTGTAACCATAAATTTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01362	32706	41772	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015696 ammonium transport

GO:0072488 ammonium transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0008519 ammonium transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001362s00038904.1	PF00909.16	Ammonium_transp	24	295	7.60E-45
Glyur001362s00038904.1	PF00909.16	Ammonium_transp	325	736	1.80E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.031
SRR1783600	control	0.063
SRR1783602	moderate drought stress	0.407
SRR1811619	moderate drought stress	0.373

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.046
DRR006520	Root Summer glycyrrhizin high producing strain	0.046
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.047
DRR006524	Root Summer glycyrrhizin low producing strain	0.047
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.159
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.159

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.806
SRR2868004	Drought Stress (root)	13.337
SRR2967015	Control (root)	11.186

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.493
SRR9715740	Leaf	0.492
SRR9715741	Leaf	1.561
SRR9715739	Root	0.514
SRR9715742	Root	0.124
SRR9715743	Root	0.180

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.030
SRR8749028	MeJA induced 9h	0.029
SRR8749029	MeJA induced 9h	0.057
SRR8749030	Uninduced	0.225
SRR8749031	Uninduced	0.097
SRR8749032	Uninduced	0.470

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.163
SRR8400027	Control - Root	1.014