Gene detail

Gene detail information of Glyur001361s00032684

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29820.1	2.00E-75	homolog of CFIM-25
NR	XP_004513455.1	4.86E-114	PREDICTED: cleavage and polyadenylation specificity factor subunit 5-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q94AF0\|CFIS1_ARATH	5.00E-93	Pre-mRNA cleavage factor Im 25 kDa subunit 1 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|V7B1E7\|V7B1E7_PHAVU	2.00E-105	Uncharacterized protein {ECO:0000313\|EMBL:ESW10683.1}

Sequence

Transcript Sequence

>Glyur001361s00032684.1
CGTTGAAGCACTTGACCATCGAGGTTCCTTGCTTAGCGCCACGTGGCACAACACACTCTCCCTTCTCCCTCTGCAACCTCGACACGCTACCTACTCTCTCCACTCTCTTCTTCAACCTTCTTTCTCCTTCTCAACAAACTCTCTCTATCAGTATTTACCTTTTTNTAATTTTTAAGTAAAGTAACAAGTGTAGTTTCCGCACTGCGAGCGAGGTTGAATCTTTGATTTCAGTGCACTCACTTAAAGCTTTTATTGGTAGTGGTGATGGGTGAGGAAGTGACCGTTACTGAAGCAAACGCAAACGCTCTCTTCCATCGTCGTCATCATAATAATCGTGAAAACAGAGGAAGCCATGATGATGATGATGATGATGATGGTGATGGTGATGATGTGAGGAGGGTGTTACCGTTGGAAGTTGATATATATCCTCTCAGTTGTTACTATTTTGGATCCAAAGATGCCATTCCCTTCAAAGACCACTCCTTCCCNGATCGTCTTCAAAGGATCAAATCCAACTATGCGGCCCGTGGAATGCGAACTTGTGTGGAAGCTGTCTTACTGGTTGAGTTGTTCAAACATCCACATTTGTTGTTGTTGCAAGTAAAAAACTCCATTTTTAAACTTCCCGGTGGCCGTTTAAGGCCAGGTGAATCAGATACTGACGGATTGAAGCGTAAGCTGGCAAGGAAGCTTTCCCTTGATGAAAATGGGGATGGGGCAGAATGGGAGGTTGGTGAATGCCTTGGAATGTGGTGGAGACCTGATTTTGAAACATTGATGTACCCCTTTTTGCCACCTAATGTAAAACAGCCAAAGGAGTGTACAAAAATCTTCCTTGTAAGGCTACCAGCAAGTCGAAGGTTCACTGTGCCAAAGAACCTGAAGTTGCTTTCAGTGCCATTGTGCCAAGTTCATGAAAACCACAAGGTTTGGAATATAGACTTTGGATTTCCATCAGTCTTGGAAATATCCAGGTTTCCAGATATTCCATTTGACATACGGGACAATTATATCAGGGGTCCCACAGCTCCTCTCAAAATTCTCCTTCAATATGATCGAATCTTAATGCTTCACTGCAACCTATCTGTCATGCACAGTGAAGAAATCTCATTAGGCAGCCAGTTCCTACAGGGACTTGTATATATCATAGCTTTTTTATACAACAATGATACTGTAATGTTGAAAACAGCAACATATATCTTGCCTGGTTGGTGTGAAGGATTGCAAAGTCACCATGGCCACAAGCCAAGAGGAGTTTTGATGTACATATGGTTGAAATAAAAAGCTTTTGTTAAATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01361	35028	39388	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006378 mRNA polyadenylation

cellular_component
GO:0005849 mRNA cleavage factor complex

molecular_function

GO:0003729 mRNA binding

GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001361s00032684.1	PF13869.1	NUDIX_2	50	227	2.80E-68
Glyur001361s00032684.2	PF13869.1	NUDIX_2	50	213	1.90E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.225
SRR1783600	control	8.332
SRR1783602	moderate drought stress	19.020
SRR1811619	moderate drought stress	19.201

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.663
DRR006520	Root Summer glycyrrhizin high producing strain	29.008
DRR006521	Root Winter glycyrrhizin high producing strain	30.116
DRR006522	Root Winter glycyrrhizin high producing strain	28.747
DRR006523	Root Summer glycyrrhizin low producing strain	23.696
DRR006524	Root Summer glycyrrhizin low producing strain	24.644
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.265
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.238

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.268
SRR2868004	Drought Stress (root)	15.936
SRR2967015	Control (root)	20.569

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.115
SRR9715740	Leaf	6.517
SRR9715741	Leaf	13.705
SRR9715739	Root	6.732
SRR9715742	Root	10.532
SRR9715743	Root	10.762

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.892
SRR8749028	MeJA induced 9h	13.382
SRR8749029	MeJA induced 9h	14.037
SRR8749030	Uninduced	4.537
SRR8749031	Uninduced	3.204
SRR8749032	Uninduced	6.173

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.072
SRR8400027	Control - Root	15.930