Gene detail

Gene detail information of Glyur001360s00037390.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34050.1	8.00E-109	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	AGV54319.1	2.40E-155	caffeoyl CoA O-methyltransferase [Phaseolus vulgaris]
COG	YP_007108508.1	2.00E-60	O-methyltransferase family protein [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q40313\|CAMT_MEDSA	2.00E-138	Caffeoyl-CoA O-methyltransferase
trEMBL	tr\|T2DPE8\|T2DPE8_PHAVU	9.00E-156	Caffeoyl CoA O-methyltransferase {ECO:0000313\|EMBL:AGV54717.1}

Sequence

Transcript Sequence

>Glyur001360s00037390.1
CACAGAAAACTCTTCCGATTCCGAAAGAAAATTAAGACAAGCACACAAGAACTAGAAGAGATGGCTGTCAATAACGAAGAGGAACAGCAAAACCACCTCATCGGCCACAAAGATCTCGCTCATAAGACTCTCCTTCGCAGCGATGCACTCTATCAGTATATTCTTGAAACCAGTGTGCATCCAAGAGAGCACGAGAGCTTGAAGGAGCTCCGCGAGATGACAGAAAAAAACCCTTGGAACCTCATGGCAACACCACCCGATGAGGGACAACTGATAAGCATGCTAATTAAGCTTATCAATGCGAAGAACACCATGGAAATTGGTGTGTACACCGGTTACTCTCTGCTCTCCACTGCCCTTGCTCTTCCCCCGGACGGAAAGATCTTGGCTATGGACGTGAACCGCGAATACTATGAGCTGGGATTGCCTATAATTCAAAAAGCTGGAGTGGGTCACAAGATTGACTTCAGAGAAGGACCTGCTCTCCCTCTTCTTGACGAGCTGCTTAAAGATGAAAACAACAAGGGATCATTTGATTTCATTTTTGTGGATGCTGACAAAGATAACTACTTGAACTATCACACGAAGGCTATTGAGCTAGTGAAGATTGGGGGGCTGATCGGGTACGATAACACCCTATGGAATGGATCAGTGGCGGCCCCACCAGATGCGCCTCTCATGGATTACATTAAGCATTATCGCGGTTACATCATGGAGCTCAATAAGTACCTGGCTCAGGATTCTAGGATCGAGATTTGCCAACTCCCGGTGGGTGATGGGATTACCCTGTGCCGCCGCATCATCTGACCACTCCTTTGCNTTCCACTTGTGATGATTTGTGTGCTTTGAGAATTTGGATTTTTATAATGAGTTTTTAACAAAATTATGTCTCGTGGAGAGTGGTTACAAACAAAATCTTTAATTTGTATGAGGTGTCTCGGATCTTGAGGTTCTATGTATAAAAGATCTTTGTCGCATTGGCAATGGGTAGGATATGGGTAGGGTACTATAGTACCCGTCCATATATCTGTAATTTTAAAAATTACTCGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01360	44849	47359	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00588	E2.1.1.104	EC:2.1.1.104	Phenylalanine metabolism	map00360
			Phenylpropanoid biosynthesis	map00940
			Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
			Flavonoid biosynthesis	map00941

Gene Ontology

molecular_function
GO:0008171 O-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001360s00037390.1	PF01596.12	Methyltransf_3	36	247	2.60E-89

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	73.433
SRR1783600	control	73.662
SRR1783602	moderate drought stress	55.634
SRR1811619	moderate drought stress	54.434

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	50.352
DRR006520	Root Summer glycyrrhizin high producing strain	49.787
DRR006521	Root Winter glycyrrhizin high producing strain	8.301
DRR006522	Root Winter glycyrrhizin high producing strain	8.138
DRR006523	Root Summer glycyrrhizin low producing strain	62.246
DRR006524	Root Summer glycyrrhizin low producing strain	62.567
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.447
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.823

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	271.526
SRR2868004	Drought Stress (root)	227.713
SRR2967015	Control (root)	172.420

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.823
SRR9715740	Leaf	23.264
SRR9715741	Leaf	13.155
SRR9715739	Root	50.712
SRR9715742	Root	53.403
SRR9715743	Root	56.813

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	270.252
SRR8749028	MeJA induced 9h	169.358
SRR8749029	MeJA induced 9h	156.310
SRR8749030	Uninduced	143.493
SRR8749031	Uninduced	70.775
SRR8749032	Uninduced	103.399

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	172.470
SRR8400027	Control - Root	166.561