Gene detail

Gene detail information of Glyur001359s00026919

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G67630.1	DNA polymerase alpha 2
NR	XP_004502324.1	PREDICTED: DNA polymerase alpha subunit B-like isoform X1 [Cicer arietinum]
trEMBL	tr\|G7JC29\|G7JC29_MEDTR	DNA polymerase alpha subunit B {ECO:0000256\|PIRNR:PIRNR018300}

Sequence

Transcript Sequence

>Glyur001359s00026919.1
ATGAAAGAGGAAATCAAGTCAGAGTTCAAGAAAANCAGGTTCGATTTCGACGACGAAGAAGAAGTGCTGAGCAAATGTCTCACTTTTTGCATCAACTACAGTCTCACCCCTTCCGATCTCGTCTCNAGCTGGGAGGTTTATTACCTGAATAGACAGCTGAACGAACCAACGGTGCAAAATGCTGAAATGGATGGCTTTCTGCTGCATCTACAAAANAATAAGAAAGAAGATATTATAAAGGGGGAAACTGGTTTGCATAGTTACTCTATCAGAGATGTAGAAATGGTCTTAAATAATGATGATGATACAAAGGACGATACTCCCACAACTCCCACGGATCATCATCATCAAGAGCTTTATTCACCTGCACGTGATACAACATCTTTGTATGGGAATGTTTTATCTTCCGGAAAACCNTCAAATCTAGTGACACCCTTTTCGAAGCGAACAGATAGGTTTGCTGTGAAATTTAGCATCAACACCATACCTGATGTAGATAACGGAAAACAAGAACCTAATCATGAGAATGCTGAGAATGATGAGGACGATATTGTGAGGAAAGTTCTACCCCGTAAAAGGTGTTCATTGGTGGTTCATGGTTCAGGGCCAAAACCAGGTTGCAGATTCATGTATGNTAGGAATGAGGATAGGGTTAATGCAATAGAAAACCGAATTAGGAAACAGGCAAGAGCACTTGTAGCTTCTGGGCTCTATGAAGAACCAACAGACCCTACAATTGCTTCACAGAGAAGCATTTTTGCCGTTGGCATGATTTGTTGTGAAGAAGAAGGCCGTCTAAACGAGAAGTCTGTCATGTTGCAGAGCAGTATTGAGCATTCTGGAGGGGAATGTGTTCGCCTAGACTTACAACGTTTAAGCCATTTTTCAGTTTTTCCTGGCCAGGTAGTTGGAATTGGAGGGCATAATCCTAGTGGGCATTGCTTAGTTGCATCTAAATTGGTGGATTTTATACCTATCTCTGTTGCTAATGAGGATTTGAATCCTGCAAAGAAGCAAGCTATTGATAAGGAGGATCAGTCAACTAATCTGCTTTGTAAACAGAGAGAGTTATCAATGATTATTGCAGCGGGCCCCTTTACTACAACAGACAATTTGTTGTTTGAGCCTCTTGTAGAACTTCTATCATATGCAAAGCGAAGACCGCCNCAGTTGCTTGTATTGCTGGGGCCCTTTATTGACTCTGAACACCCAGACATTAAGAAAGGAACCACGGACAGGGGTTTTGATGAAATATTTCATTTTGAAGTCTTGAGGAAGTTGGAAGATTATGTAGAATGTATGGGTTTAGCAGCACGTGTTCTTCTTGTACCATCTATACGGGATGCTAACCACGATTTTGTTTTTCCTCAGCCTGCATTTGATATCAGTCTACCTCATCTCAAATCTCAGATAGTCAGTCTCACTAATCCTGGAATCTTTGAGGCAAATGAGGTCAAAGTTGGTTGCTGCACTGTGGATGTTCTAAAGCAGGTCAGTGGGGAGGAGATATCACGAACTGCAGCAGATGGAAAACCTATTGATCGCTTGAGTAGACTTGCAAACCATATTCTTAACCAACAAAGCTTCTATCCACTTTACCCACCGGCAGAAAGTGTTCCCTTGGACTTTTCTCTGGCGCCAGAAGCCCTTCAACTGTCATTGGTTCCAGATGTTCTTATCTTACCTTCAGACATCAAGTACTTTGTCAAGGTGCTTAATAACGAGNGTGAAGAGATAAACCACAAGAAATGCATTGCNGTCAATCCGGGAAGATTGGCCAAGGGAGAAGGAGGGGGTACTTTTGTAGAGCTTGATTATAGTGGGGGTCCCGACAGAATCAACGCTTCAATTATTGGCATATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01359	60705	67435	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006260 DNA replication

molecular_function

GO:0003677 DNA binding

GO:0003887 DNA-directed DNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001359s00026919.1	PF08418.5	Pol_alpha_B_N	15	165	2.20E-06
Glyur001359s00026919.1	PF04042.11	DNA_pol_E_B	360	570	5.00E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.392
SRR1783600	control	8.418
SRR1783602	moderate drought stress	3.644
SRR1811619	moderate drought stress	3.507

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.822
DRR006520	Root Summer glycyrrhizin high producing strain	4.730
DRR006521	Root Winter glycyrrhizin high producing strain	4.670
DRR006522	Root Winter glycyrrhizin high producing strain	4.649
DRR006523	Root Summer glycyrrhizin low producing strain	2.589
DRR006524	Root Summer glycyrrhizin low producing strain	2.496
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.109
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.229

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.698
SRR2868004	Drought Stress (root)	7.120
SRR2967015	Control (root)	6.331

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.455
SRR9715740	Leaf	1.095
SRR9715741	Leaf	0.678
SRR9715739	Root	0.683
SRR9715742	Root	1.972
SRR9715743	Root	2.261

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.286
SRR8749028	MeJA induced 9h	18.720
SRR8749029	MeJA induced 9h	11.294
SRR8749030	Uninduced	2.599
SRR8749031	Uninduced	1.390
SRR8749032	Uninduced	1.507

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.629
SRR8400027	Control - Root	11.987