Gene detail

Gene detail information of Glyur001359s00026910

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14230.1	0
NR	KHN24082.1	0	Ankyrin-3 [Glycine soja]
COG	YP_001958455.1	2.00E-29	hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
trEMBL	tr\|K7MPA3\|K7MPA3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G01200.2}

Sequence

Transcript Sequence

>Glyur001359s00026910.1
ATGGTGATGTTGGTGAATTCTGGTACTACGCCTGGGCTAAGGAAACAGGTTTTTCCAATCGATTACGAAACAGAGATGTCACAGCGTCTGGTAGAAGCTGCTCATCGCGGTGACACAGACACTGCAATCGAGTGTGTCGCGAATCCATTGGTGGACGTGAACTTCATCGGAACGGTGTCGTTGAAGTCCAAGACGACGGAGATCGTTCTGCGAGACGAGTCGCCTCACCGAGTTCACTCGGTGTACGAGGAGTTCAAGACCGATGTCACTGCTCTGTTCCTTGCTGCGCATTCTGGGAACTTGACACTCCTCCGTAAGCTACTCAATGTTGGAGCTAATGTGAATGTGAGGTTGTTCCGGGGCTATGCCACAACAGCAGCAGTGAGGGAAGGCCATTTAAAAGTATTAGAGGTCCTTATCAATGCTGGGGCGTCACAACTTGCATGCGAGGAGGCTTTACTAGAAGCAAGCTACTTGGGACGGGCCAGATTTGCTGAAATACTCATGCAGTCCAACATGGTCCGTCCAAATGTTGCAATTCATGCCTTTGTCTCTGCCTGTTGCAGAGGCTTCATTGAGGTTGTTGATGTACTCATCAAGCATGGAGTGGATACCAATGCAATTGATAGAACGCTGCTTCAATCTTCAAAGCCATTTCTTCACGCTAATGTTGATTGCAATGCATTATTCGCTGCTGTTGTCAGCAGGCAGATTAATGTTGTTAGATTACTGTTGCAGGTTGGCGTAAGACTTGATATCAAGGTCAAACTGGGAGCTTGGTCATGGGAAACAGATACAGGAGAAGAATTTCGTGTGGGTGTTGGACTAGCGGAGGCTTATCCAATCACCTGGTGTGCTGTGGAGTATTTTGAATCTAGTGGTGCTATATTGCATATGCTGCTCTGCCACCTCTCGCCTAATAGTTTGCACATTGGGAGGACTCTCTTGCACCATGCCATAGTTTGCAACAATGAAAAAGCAGTAAATATACTTCTGAATAGTGGAGCAGATACAGAAGTGGCAGTGCAAACCTCTGAAGAAACCAATGTACACCCTATTCACATGGCTGCAAGGCTTGGATCATGGAACATCCTTCAGTGCTTGATTAATAATGGTAGTTGTAACTTGGACTCCCAAACAAAATCTGGAGACACGGCATTGATGATTTGCGCAAGGTATAAACATGAGAAGTGCCTTAGAGTCCTAATTTCAGCAGGTGCTGATTTGGGGGTGGTAAATTCATCTGGTCATTGTGCAACTTCAATTGCAAACTCAGTTCAGTGGATTAAAGNATTCCACAAGGTAATTTTGGATGCATTTAGAGCCGGAAAGGATGTTAAATCAAGCAATGCCTCTAGATTTTCCTCTTTGTTATTTGTCACTCGTGCAAATGAGATAGAGGCTTTGAAAAAACTCATTCAGAACAGGAACATAGATATTAATGAACAAAATGNCAATGGATTTTCGGCTGCCATGGTAGCTGCAGTAGGGGGTAATGTTGAAGCTTTCAGGTTGCTTCTTTATGCTGGTGCTGATGTAACCAAGCTTAAAAACAAGTATGGTTTAACAGCTCTTAACCTCATAGACTTGAGCNACAATGTGGAATTGTTTCACAAGGTGATGTTTGAATATGAACTTCTAAAGGGGTGCAATGGTACTTCAACTGAGGTGAATCCTCTCCACCGTGCAGCTCAATATGGGGACATAAACATTGTACAAAAACTATTAAAAGAAGGGTATGATGTAAATGCTTTTGATGGACATGGGTATACCCCATTGATGTTAGCAGCAAGAGGGTGTCGTGGAGAAATGTGTGAGCTTTTGATATCTTGTGGAGCCAAGTGTGATATTCAGAATGAGAGGCACGAGACAGCACTTTCACTTGCAAGAGAAAATGGGGCAGGAAATGACGCAGAGCGTGTGATATTGGATGAGCTAGCTAGAAGGGTAGTCCTTTGTGGGGCTCGTGTGAAGAAGCATACAAAGTGTGGTAAAGGGTCACCTCATAGGAAGAACCTGGTAATGGTGGGTGCTGCTGGGATCTTACGTTGGGGGAAATCGAATAAGAGGAACGTGGTTTGTAAAGAGGCTGAGGTTGGAGCAAGTGCAAAGTTTCGATGGAATCGAAGGAAGAAGTTTGATGTTGATGAGCCAGGGATGTTCCATGTTGTCACTACAAGAAACAAGCAGGTGCATTTTGTGTGTAAGGGTGGGGTTGAAATGGCTGAGTTGTGGGTAAGGGGGATTAGGTTGGTAACAAGAGAGGCCATTTTTGGCCANAGTGCTGCTAATAACGGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01359	5803	11456	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001359s00026910.1	PF12796.2	Ank_2	51	145	3.50E-08
Glyur001359s00026910.1	PF12796.2	Ank_2	155	253	2.20E-07
Glyur001359s00026910.1	PF12796.2	Ank_2	316	411	5.80E-17
Glyur001359s00026910.1	PF12796.2	Ank_2	442	514	1.60E-07
Glyur001359s00026910.1	PF12796.2	Ank_2	546	619	4.00E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.598
SRR1783600	control	2.604
SRR1783602	moderate drought stress	2.260
SRR1811619	moderate drought stress	2.177

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.353
DRR006520	Root Summer glycyrrhizin high producing strain	1.265
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.345
DRR006524	Root Summer glycyrrhizin low producing strain	1.405
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.778
SRR2868004	Drought Stress (root)	2.887
SRR2967015	Control (root)	2.453

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.110
SRR9715741	Leaf	0.028
SRR9715739	Root	0.086
SRR9715742	Root	1.563
SRR9715743	Root	1.458

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.083
SRR8749028	MeJA induced 9h	0.087
SRR8749029	MeJA induced 9h	0.053
SRR8749030	Uninduced	0.072
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.049

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.464
SRR8400027	Control - Root	8.781