Gene detail

Gene detail information of Glyur001354s00030739

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33385.2	2.00E-10	actin-related protein C2B
NR	XP_004497823.1	2.30E-43	PREDICTED: probable actin-related protein 2/3 complex subunit 2-like isoform X2 [Cicer arietinum]
Swissprot	tr\|F4IVU1\|ARC2B_ARATH	9.00E-12	Actin-related protein 2/3 complex subunit 2B
trEMBL	tr\|K7LJ91\|K7LJ91_SOYBN	3.00E-41	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G27630.3}

Sequence

Transcript Sequence

>Glyur001354s00030739.1
AGCCTCTAATCCACTAGTAGCCTACTTGTCAATATCAATCCCACCTCTTTGCCATGGAGGAGTGTTACCGAGTGAACTTTCTCCATACACCATTGAAATGGTAAAGGGACTTTGTCCTAANGTTGTGGAGATTGCAGAACCTGCTAGAGAAGGATTTCAGCTCACTCTGAAGCTTGACCTCAATCAGATTCCACGAAGNAAAGACTATGTCAAGGTCATTAGGGAGATTTCCACAGTGCAATCAGTAATTCTGAGTTCACAGCTGAAAGAAATATTGTGGAATGTGAATTCTGATGATGCAGCTCAAGGGATGTACAAACCCATCAAACTAGTCTACAATCCAAGAGAACCTTTCTTTGTCATCAGGCAGCCACAAAGAATCATAGCAGTATTCCCAATTCGTTTCAGAGAAAAGTCAGATGTGATTATTGCAACAGCTTTCTTTCAGGAGCTCGTGGATGTNGGAAATTCAGATAAATGGACCAAGGCACCACCTTGCACCTGGTCAGCCATACCGCCACCGGAGTTGAGAGGAGAAGCTTTTGAGGATTTGAGTACCAATGGAGGGTTTTTCTCTTTNGATATCTCTTCTCGCCATGTCGAAGGCAATAGGCTAGACAAAACTGTCTGGAATCTATTAAATTTTAATGCCTATGTTAGATACCATGTAAAGGTAACATCAATATTAATATTGNTTCATAAGGACTACTTCCAAATGAAAATCACTTGATTTCTGACATCTTTGACTAACATCTGTACTACACAGAGCACAAAAGGTTTTATTCAGAGAAGGATGAGGAAACGTTTGGAGAATTTGGTTGAGGTCCTGCACCAAACAAACTCAGAAGAAAATGAACAAACCAAACAAGTGAAACAACATCAAGGATTTAGGTATACGAAGAAACTAGTGAGATCATCAAAATATAACATCCTGAAACAGAAATGGGGAACCTTTGGCAGAAAAATTAAGAGGATCCATTTCCGACTTAAGATTCATGGATTTACACGATTTCGTCAACGATGGTTGAGGTTCCCAAAATTTTCTTCAACAGAATATACAAAACTAGAGTAGATATATTTGCAGCTATTATTTTTTATGTAATATATGGACTCCAACTAAATGAGATGGACCTGGAAGATCTTCAGAGCACCATTNCTCATGTATATTGTATATAACTATAAAATTTATCTGACTTTCAANTTCAACTACTTGATTGTAATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01354	62451	66262	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001354s00030739.2	PF04045.9	P34-Arc	77	223	3.30E-21
Glyur001354s00030739.3	PF04045.9	P34-Arc	24	80	2.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.620
SRR1783600	control	0.467
SRR1783602	moderate drought stress	0.411
SRR1811619	moderate drought stress	0.315

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.539
DRR006520	Root Summer glycyrrhizin high producing strain	5.509
DRR006521	Root Winter glycyrrhizin high producing strain	0.005
DRR006522	Root Winter glycyrrhizin high producing strain	0.074
DRR006523	Root Summer glycyrrhizin low producing strain	3.152
DRR006524	Root Summer glycyrrhizin low producing strain	3.477
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.030
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.537

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.988
SRR2868004	Drought Stress (root)	6.048
SRR2967015	Control (root)	4.140

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.865
SRR9715740	Leaf	1.970
SRR9715741	Leaf	0.790
SRR9715739	Root	0.017
SRR9715742	Root	0.967
SRR9715743	Root	1.033

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.049
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.046
SRR8749030	Uninduced	0.328
SRR8749031	Uninduced	0.823
SRR8749032	Uninduced	0.809

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.476
SRR8400027	Control - Root	5.739