Gene detail information of Glyur001350s00040155 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57930.2 | 8.00E-145 | Arabidopsis thaliana protein of unknown function (DUF794) |
| NR | XP_006587114.1 | 0 | PREDICTED: APO protein 2, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q8W4A5|APO2_ARATH | 0 | APO protein 2, chloroplastic (Precursor) |
| trEMBL | tr|I1L239|I1L239_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G10560.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01350 | 50871 | 53057 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001350s00040155.1 | PF05634.6 | APO_RNA-bind | 35 | 237 | 5.60E-88 |
| Glyur001350s00040155.1 | PF05634.6 | APO_RNA-bind | 275 | 387 | 4.20E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.796 |
| SRR1783600 | control | 6.861 |
| SRR1783602 | moderate drought stress | 8.340 |
| SRR1811619 | moderate drought stress | 8.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.904 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.683 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.261 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.560 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.057 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.189 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.699 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.544 |
| SRR2868004 | Drought Stress (root) | 6.004 |
| SRR2967015 | Control (root) | 8.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.069 |
| SRR9715740 | Leaf | 30.665 |
| SRR9715741 | Leaf | 24.595 |
| SRR9715739 | Root | 1.428 |
| SRR9715742 | Root | 4.084 |
| SRR9715743 | Root | 3.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.589 |
| SRR8749028 | MeJA induced 9h | 6.713 |
| SRR8749029 | MeJA induced 9h | 3.260 |
| SRR8749030 | Uninduced | 3.782 |
| SRR8749031 | Uninduced | 2.186 |
| SRR8749032 | Uninduced | 2.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.434 |
| SRR8400027 | Control - Root | 5.048 |