Gene detail information of Glyur001349s00028255 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31985.1 | 2.00E-21 | Ribosomal protein L39 family protein |
| NR | KHN44040.1 | 1.71E-32 | 60S ribosomal protein L39 [Glycine soja] |
| COG | YP_006861875.1 | 3.00E-08 | 50S ribosomal protein L39e [Candidatus Nitrososphaera gargensis Ga9.2] |
| Swissprot | tr|P51425|RL39_MAIZE | 8.00E-32 | 60S ribosomal protein L39 |
| trEMBL | tr|M0SEA6|M0SEA6_MUSAM | 1.00E-31 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P13390_001} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01349 | 68586 | 69382 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001349s00028255.1 | PF00832.15 | Ribosomal_L39 | 64 | 105 | 2.20E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 41.683 |
| SRR1783600 | control | 42.307 |
| SRR1783602 | moderate drought stress | 65.258 |
| SRR1811619 | moderate drought stress | 65.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 124.547 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 123.696 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 131.114 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 127.998 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 105.265 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 105.057 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.100 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 409.468 |
| SRR2868004 | Drought Stress (root) | 248.680 |
| SRR2967015 | Control (root) | 209.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 126.787 |
| SRR9715740 | Leaf | 126.434 |
| SRR9715741 | Leaf | 109.138 |
| SRR9715739 | Root | 301.104 |
| SRR9715742 | Root | 218.894 |
| SRR9715743 | Root | 219.993 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 416.354 |
| SRR8749028 | MeJA induced 9h | 117.456 |
| SRR8749029 | MeJA induced 9h | 320.101 |
| SRR8749030 | Uninduced | 47.037 |
| SRR8749031 | Uninduced | 26.907 |
| SRR8749032 | Uninduced | 89.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 344.266 |
| SRR8400027 | Control - Root | 342.599 |