Gene detail

Gene detail information of Glyur001349s00028254.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31990.2	0	aspartate aminotransferase 5
NR	XP_004498776.1	0	PREDICTED: aspartate aminotransferase P2, mitochondrial-like [Cicer arietinum]
COG	YP_004421156.1	4.00E-119	aromatic amino acid aminotransferase [Gallibacterium anatis UMN179]
Swissprot	tr\|P26563\|AATM_LUPAN	0	Aspartate aminotransferase P2, mitochondrial (Precursor; Fragment)
trEMBL	tr\|O22618\|O22618_LOTCO	0	Aspartate aminotransferase {ECO:0000256\|RuleBase:RU000480}

Sequence

Transcript Sequence

>Glyur001349s00028254.1
ACTCATAAATTAAAAAATGATGATATTCGAGCATATAACACTTTATGGTTGATAAATCCATTGTACTCGTCGCCCACTGTTTCCTTCCTTCTATTTTTCTCACTGATAATAAATCTCTACTTTGATCTCATCGTATCCTCCTTCTTCAACCCGCTTCCATTCGAAATGGCTTCTACGGTGCTCTCCGTAGCTTCACACTCTGTACTCTCTCCCTCTGCTTCACTTTCAGTGCACGAAACCCACAAGGGAAAACTCAAGTTTGGAGGCAACGGTTTGAGATTCAGCAAGTCTTCTGGTCGGATCTCTATGGCTGTTGNGGTTAATGTTTCTCGGTTTGAGGGCATACCTATGGCTCCTCCTGATCCGATTCTCGGAGTTTCGGAAGCATTCAAAGCGGACACAAGTGATGTCAAGCTCAATCTTGGAGTTGGGGCCTACAGAACGGAAGAGATACAGCCATATGTGCTTAATGTTGTTAAGAAGGCAGAGAATCTTATGCTGGAGAGAGGGGAAAACAAAGAGTATCTCCCTATCGAGGGTTTGGCTGCATTTAATAAGGCAACTGCAGAGTTGTTACTCGGAGCAGACAACCCGGCAATCAAACAGNAAAGAGTTGCCACTGTCCAAGGTCTTTCCGGAACTGGTTCTCTGCGACTAGCTGCAGCTCTGATAGAACGATACTTTCCTGGGGCAAAAGTTTTGATATCAGCACCTACATGGGGTAATCACAAGAATATTTTCAATGATGCTAGAGTCCCATGGTCTGAGTACCGATATTATGATCCCAAGACAGTTGGATTGGATTTTGAGGGCATGATAGAAGATATAAAGTCGGCTCCCGAAGGATCTTTTGTGCTACTTCATGGATGCGCTCATAACCCTACTGGTATTGATCCAACAGCTGAACAGTGGGAAAAAATAGCTGATGTAATTCAAGGAAAAAACCACATTCCATTTTTTGATGTTGCTTNCCAGGGNTTTGCTAGTGGAAGCCTTGACGANGATGCAGCATCTGTGAGATTGTTTGTGTCACGTGGCATGGAGGTTCTTGTAGCTCAGTCATATAGTAAAAATCTTGGTCTCTATGCTGAAAGGATTGGAGCAATCAATGTCATTTCCTCATCACCAGAATCTGCAGCAAGGGTAAAAAGCCAATTGAAAAGGCTTGCTCGACCAATGTACTCTAATCCGCCTGTTCACGGNGCTAGAATTGTTGCTGATGTTGTTGGAAATCCAGCTCTCTTCAATGAATGGAAAGCAGAAATGGAAATGATGGCCGGAAGGATAAAGACTGTTAGACAGAAGCTATATGATAGTATTTCTTCAAAAGACAAGAGTGGAAAGGATTGGTCATTCATACTTAAGCAGATAGGCATGTTCTCGTACACAGGGTTGAACAAGAACCAGAGTGACAATATGACAAATAAGTGGCATGTATACATGACAAAGGATGGAAGAATTTCCCTGGCAGGATTGTCGTTGGCCAAATGTGAATACCTTGCAGATGCTATTATTGACTCGTTTCATAACGTCAGCTGAAACTCGATGAAATATGCTGTAGAACCAAGCTTATANTTTTTGTGAGTATTATACCCAATCAAAGTGACTGGCACACATGACAATAATTCAATTATGTATGTATTAATTGTCATACATATGTACCTGAAAGTCCCTTGGGAAATTTTGTAACCTTGAAATAAGTTGAATCAAAGTGTTGACACATAATGAGTCTGCATGGCAGACTTGAAGCAAGTTTAATAATTGATTTATAGGGTCTGGTTCTTATTTCCTGTGGGTGAGACTGAATTGAGCATGATAATAATAGTTTTGTTGGCTGCATGTGCTTCTTTGCTAGTCAGTTTCTTTTTAAGCCTGCTTNCAATACGATAATCATTTCTATTGATAGAAAACCTTGAATCATCCATAGGGATTGGCGATGAGGTAATTAGAAGAACCAAGAACGTAAAATAATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01349	60841	65248	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00811	ASP5	EC:2.6.1.1	2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Alanine, aspartate and glutamate metabolism	map00250
			Cysteine and methionine metabolism	map00270
			Arginine biosynthesis	map00220
			Arginine and proline metabolism	map00330
			Tyrosine metabolism	map00350
			Phenylalanine metabolism	map00360
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
			Isoquinoline alkaloid biosynthesis	map00950
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

biological_process

GO:0006520 cellular amino acid metabolic process

GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0008483 transaminase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001349s00028254.1	PF00155.16	Aminotran_1_2	138	504	6.40E-92

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	58.211
SRR1783600	control	58.238
SRR1783602	moderate drought stress	48.049
SRR1811619	moderate drought stress	47.460

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	61.252
DRR006520	Root Summer glycyrrhizin high producing strain	60.381
DRR006521	Root Winter glycyrrhizin high producing strain	83.610
DRR006522	Root Winter glycyrrhizin high producing strain	81.539
DRR006523	Root Summer glycyrrhizin low producing strain	90.295
DRR006524	Root Summer glycyrrhizin low producing strain	89.585
DRR006525	Leaf Summer glycyrrhizin high producing strain	78.138
DRR006526	Leaf Summer glycyrrhizin high producing strain	77.690

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	121.722
SRR2868004	Drought Stress (root)	91.509
SRR2967015	Control (root)	84.069

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	98.082
SRR9715740	Leaf	103.266
SRR9715741	Leaf	98.012
SRR9715739	Root	14.030
SRR9715742	Root	40.748
SRR9715743	Root	35.735

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	55.159
SRR8749028	MeJA induced 9h	92.563
SRR8749029	MeJA induced 9h	75.780
SRR8749030	Uninduced	96.742
SRR8749031	Uninduced	89.270
SRR8749032	Uninduced	85.768

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	128.352
SRR8400027	Control - Root	114.760