Gene detail

Gene detail information of Glyur001349s00028247

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G11040.1	TRS120
NR	XP_003550201.1	PREDICTED: trafficking protein particle complex subunit 9-like [Glycine max]
Swissprot	tr\|Q9FY61\|TR120_ARATH	Trafficking protein particle complex II-specific subunit 120 homolog {ECO:0000305}
trEMBL	tr\|I1MWX3\|I1MWX3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G33020.1}

Sequence

Transcript Sequence

>Glyur001349s00028247.1
AAGCAGTAAGAAAAAGCAGGGAGTGTNGAGAAAGAGCAAAGTAGTAGTAAACTAACCGGTGCGGTGTCAGTGTCGCAATGGAACCGGAGGTGAGCATCGAGGGATCGTCGATGATCCAAGTGGCGGTGCTTCCGATCGGAACGGTACCGGCGAACTTGCTGCGTGACTATTACTCGATGCTGCTCCCGCTGCACACGATCCCCCTCTCCGCGATCAGTTCCTTCTACACGGAGCACCAGAAATCTCCGTTCGCGCACCAACCCTGGGACTCCGGTTCGCTCCGGTTCAAGTTCGTCCTCGGCGGCGCTCCTCCCAGCCCCTGGGAGGACTTCCAGTCCTACCGCAAAACCCTCGCNGTCGTCGGCATTGTCCACTGCCCTTCCTCGCCGGATCTCAACGCCGTCATCGATCAATTCTCCACCGCNTGCAGGTCTTNCCCTTCCTCCCTCGTCGATCGCTGCTTCGCCTTCTGCCCCAACGATTCCCAGCTTGAGGATGGAAGTAAGAGTGGGGAGAATTTGAGGTTGTTTCCTCCTGCGGATCGTCCTACGTTAGAGTTTCACTTGAACACTATGGTGCAAGAAATAGCTGCTTCGCTGCTTATGGAGTTNGAGAAGTGGGTGCTTCAGGCCGAATCTTCTGGAACCATACTTAAGACTCCTTTGGATTCTCAAGCTAGTCTCAGCTCAGAGGAGGTGTTTCATGTTATCAAGGCCAAAAAAAGGAGACTTGGGCGGGCGCAGAAGACCATTGGTGATTACTGCTTGCTGGCTGGTTCTCCGGTTGATGCCAATGCTCATTATTCTACTGCATTGGAACTTGCCAGGTTGACTGGGGACTACTTCTGGTATGCTGGAGCATTGGAGGGTAGCGTTTGTGCCTTGCTGATTGACCGTATGGGCCAGAAAGATTCAGTCTTGGAGGAAGAAGTTAGATATCGTTATAATAGTGTCATCTTGAATTACAAGAAGTCACAAGATAATGCTCAGCGAGTTTCTCCCCTAACTTTTGAACTTGAAGCTACTCTGAAATTAGCAAGGTTCCTTTGCAGGAGAGAGCTGGCCAAGGAGGTGGTGGAGTTGTTAACTACTGCTGCAGATGGTGCTAAATCTTTAATCGATGCAAGTGATAGACTCATATTATTTATTGAAATAGCTCGTTTGTATGGCAGTCTTGGATACCAGAGAAAAGCTGCTTTCTTTTCAAGGCAGGTTGCTCAGTTATATCTGCAGCAAGAAAATAGGCTGGCTGCAATTAGTGCTATGCAAGTTTTGGCNATGACCACAAGAGCTTATCATGTTCAAAGTAGATCATCAATCTCCGATCATTCTATTCATAATAAGGGAATTGGATCAAATAGTGCTGATGGTGGGAAAATATATCACCANTCAGTTGTCTCACTATTTGAGTCTCAATGGAGTACCATCCAAATGGTTGTATTAAGAGAAATTCTGCTCTCTGCAGTTCGTGCTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGACTTCTTAGGTCCTACTATCCTCTAATAACTCCTGCTGGGCAAAACGGCCTTGCTAATGCACTTTCAAATTCAGCTGAGAGGCTGCCACCAGGGACTCGTTGTGCTGATCCTGCTTTACCTTTTATAAGGCTACATTCCTTTCCTGTCCACCCAACACAAATGGACATTGTAAAACGTAATCCAGCTAGAGAAGACTGGTGGGCAGGTTCTGCTCCATCAGGCCCTTTCATTTACACGCCATTTAGTAAAGGAGAGCCAAATAATATCAAGAAGCAAGAACTTGTTTGGATTGTTGGAGAGCCTGTCCAGGTTTTGGTGGAATTGGCAAACCCATGTGGCTTTGATTTAAGAGTTGATAGCATCTATCTATCTGTGCATTCAGGAAATTTTGACGCTTTTCCCGTGAGTANAAGCCTTCTACCAAATTCTTCAAAAGTGATCACCTTATCAGGCATTCCAACATCAGTGGGGCCAGTTACAATTCCTGGGTGCATTGTCCATTGTTTTGGTGTTATTACTGAACACCTGTTTAGAGAGGTTGACAATCTGCTTCTTGGGGCTGCACAAGGGCTTGTCCTTTCTGACCCTTTTCGATGCTGTGGATCTCCAAAGTTGAAGAATGTATCAGTTCCAAGTATTTCTGTAGTACCACCACTTCCATTGCTGATATCACATGTTGTTGGAGGTGATGGTGCCATCATTTTGTATGAAGGAGAAATTCGTGANGTGTGGATAAGTCTGGCTAATGCAGGCACTGTTCCAATCGAACAGGCACATATTTCACTGTCAGGGAAAAATCAAGATTCTGTAATTTCATATTCGTCTGAAACTTTAAAATCTTGCCTCCCTCTAAAACCTGGAGCAGAAGTGACATTCCCCGTGACCTTGCGAGCCTGGCAGGTTGGNATTGCGGATGCTGACACTGGTACTGGGAAGAATATCTCTGGAAGCAATATGAGGCATTCCAAAGATGGAAGTAGCCCATCGTTATTGATCCACTATGCCGGTCCGCTGAAAACCTCTGACGATCCAAATGGATCAACTGTGTCCCCNGGTAGACGCCTTGTTGTTCCCCTCCAGATTTGTGTTTTGCAGGGTTTGTCTTTTGTAAAGGCTCAGCTGCTTTCAATGGAATTTCCTGCTCATGTTGGTGAAAATCTTCCTAAATTGGATGAGGTAAATAATAGGTCCGCTGGAGGACATGTTACAGAGACAAAAATGGAAAGATTGGTGAAAATAGATCCTTTCAGAGGAAGTTGGGGACTGCGTTTTCTTGAACTTGAGCTGTATAATCCAACGGATGTTGTGTTTGAAATCAATGTCTCTGTCAAACTGGAGAACTCCAGTAATGAGGACAATCATTTTGCTGATCAGGATNCTACAGAATATGGCTATCCTAAAACAAGAATTGATAGAGATTGCTCAGCAAGGGTTCTAGTGCCTCTTGAGCATTTTAAATTACCTGTTCTTGATGAATCCGTTTTTGTGAAGGACACTCAGACAGATGGGACTGGTGGAGGAAGAAGTGCATCATTCTCTGAAAAGAGCAGCAAAGCCGAACTCAATGCTTGTATCAAGAACCTTATATCCAGGATTAAGGTTCAATGGCATTCAGGACGCAATAGCTCCGGAGAGTTAAATATCAAGGATGCTATCCAGGCAGCTCTACGGACATCAATCATGGATGTTTTGCTGCCAGATCCACTGACATTTGGCTTCAGGCTTGTTAGAGAGGGTTTTGAATCAGAAAATCCTGATCCTGATAAGCAATCTGATTTAGCTGAATATCCTGCTTCCAAAGGTTCTGTGCTTGCACATGAAATGACACCGATGGAAGTTCTGGTCCGTAACAACACAAAGGATATGATCAAAATGAGTCTTAATATTACATGCAGAGATGTAGCTGGGGAAAATTGTGTAGACGGTACCAAGGCAACTGTTCTATGGACTGGTGTTCTGAGTGATATTACTATGGAAATTCCCCCACTTCAACAAATTAAACATTCTTTCTGCCTGCATTTCCTTGTACCGGGAGAGTATACGCTACTTGCTGCAGCAGTGATCGATGATGCGAGTGACATCCTTCGAGCTCGTGCCAGGACAACTTCAGCTGCCGAGCCAATTTTCTGTCGTGGACCACCATATCACGTACGTGTACTTGGGACTGCATGACAATTTTTGTCCGTAGATGTGTTGTGATGTGATTGTACTAAAGCTAAAATTTGTAGATTTCATTTGGTTATTTAGAATGATGCTGTTAAGTTACACGCGGGGATGCTCCTCAGGTTCTTCTGGTTGAAATTTCATGGAAGTGTACTTTCCAAATTATTTAAGAATTCAACGGAAGGAATAACTTGGGGGGTTT

Protein Sequence

>Glyur001349s00028247.1
MEPEVSIEGSSMIQVAVLPIGTVPANLLRDYYSMLLPLHTIPLSAISSFYTEHQKSPFAHQPWDSGSLRFKFVLGGAPPSPWEDFQSYRKTLAVVGIVHCPSSPDLNAVIDQFSTACRSXPSSLVDRCFAFCPNDSQLEDGSKSGENLRLFPPADRPTLEFHLNTMVQEIAASLLMEXEKWVLQAESSGTILKTPLDSQASLSSEEVFHVIKAKKRRLGRAQKTIGDYCLLAGSPVDANAHYSTALELARLTGDYFWYAGALEGSVCALLIDRMGQKDSVLEEEVRYRYNSVILNYKKSQDNAQRVSPLTFELEATLKLARFLCRRELAKEVVELLTTAADGAKSLIDASDRLILFIEIARLYGSLGYQRKAAFFSRQVAQLYLQQENRLAAISAMQVLAMTTRAYHVQSRSSISDHSIHNKGIGSNSADGGKIYHXSVVSLFESQWSTIQMVVLREILLSAVRAGDPLTAWSAAARLLRSYYPLITPAGQNGLANALSNSAERLPPGTRCADPALPFIRLHSFPVHPTQMDIVKRNPAREDWWAGSAPSGPFIYTPFSKGEPNNIKKQELVWIVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPVSXSLLPNSSKVITLSGIPTSVGPVTIPGCIVHCFGVITEHLFREVDNLLLGAAQGLVLSDPFRCCGSPKLKNVSVPSISVVPPLPLLISHVVGGDGAIILYEGEIRXVWISLANAGTVPIEQAHISLSGKNQDSVISYSSETLKSCLPLKPGAEVTFPVTLRAWQVGIADADTGTGKNISGSNMRHSKDGSSPSLLIHYAGPLKTSDDPNGSTVSPGRRLVVPLQICVLQGLSFVKAQLLSMEFPAHVGENLPKLDEVNNRSAGGHVTETKMERLVKIDPFRGSWGLRFLELELYNPTDVVFEINVSVKLENSSNEDNHFADQDXTEYGYPKTRIDRDCSARVLVPLEHFKLPVLDESVFVKDTQTDGTGGGRSASFSEKSSKAELNACIKNLISRIKVQWHSGRNSSGELNIKDAIQAALRTSIMDVLLPDPLTFGFRLVREGFESENPDPDKQSDLAEYPASKGSVLAHEMTPMEVLVRNNTKDMIKMSLNITCRDVAGENCVDGTKATVLWTGVLSDITMEIPPLQQIKHSFCLHFLVPGEYTLLAAAVIDDASDILRARARTTSAAEPIFCRGPPYHVRVLGTA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01349	32266	38804	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001349s00028247.1	PF08626.6	TRAPPC9-Trs120	1	278	5.10E-90
Glyur001349s00028247.1	PF08626.6	TRAPPC9-Trs120	279	1149	3.20E-173

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.093
SRR1783600	control	27.157
SRR1783602	moderate drought stress	29.199
SRR1811619	moderate drought stress	29.315

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.653
DRR006520	Root Summer glycyrrhizin high producing strain	19.507
DRR006521	Root Winter glycyrrhizin high producing strain	10.854
DRR006522	Root Winter glycyrrhizin high producing strain	10.414
DRR006523	Root Summer glycyrrhizin low producing strain	15.261
DRR006524	Root Summer glycyrrhizin low producing strain	15.156
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.727
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.626

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.623
SRR2868004	Drought Stress (root)	25.332
SRR2967015	Control (root)	29.848

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.612
SRR9715740	Leaf	9.220
SRR9715741	Leaf	9.848
SRR9715739	Root	12.516
SRR9715742	Root	22.011
SRR9715743	Root	20.223

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.203
SRR8749028	MeJA induced 9h	11.960
SRR8749029	MeJA induced 9h	4.153
SRR8749030	Uninduced	2.121
SRR8749031	Uninduced	1.471
SRR8749032	Uninduced	1.482

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.813
SRR8400027	Control - Root	29.069