Gene detail information of Glyur001348s00036181 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16710.1 | 7.00E-57 | Iron-sulphur cluster biosynthesis family protein |
| NR | XP_004494031.1 | 3.26E-84 | PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial-like [Cicer arietinum] |
| COG | YP_422389.1 | 1.00E-42 | hypothetical protein amb3026 [Magnetospirillum magneticum AMB-1] |
| Swissprot | tr|Q8LBM4|ISAM1_ARATH | 6.00E-72 | Iron-sulfur assembly protein IscA-like 1, mitochondrial (Precursor) |
| trEMBL | tr|I1JQ14|I1JQ14_SOYBN | 8.00E-83 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G35280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01348 | 38821 | 41674 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001348s00036181.1 | PF01521.15 | Fe-S_biosyn | 22 | 121 | 1.40E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.356 |
| SRR1783600 | control | 4.191 |
| SRR1783602 | moderate drought stress | 3.789 |
| SRR1811619 | moderate drought stress | 2.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.106 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.008 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.834 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.250 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.952 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.317 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.302 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.237 |
| SRR2868004 | Drought Stress (root) | 0.065 |
| SRR2967015 | Control (root) | 0.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.078 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.047 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.070 |
| SRR8749030 | Uninduced | 0.046 |
| SRR8749031 | Uninduced | 0.021 |
| SRR8749032 | Uninduced | 0.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.825 |
| SRR8400027 | Control - Root | 1.182 |