Gene detail

Gene detail information of Glyur001348s00036180.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67190.2	1.00E-150	F-box/RNI-like superfamily protein
NR	XP_004494029.1	0	PREDICTED: F-box/LRR-repeat protein At1g67190-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9ZW88\|FBL34_ARATH	0	F-box/LRR-repeat protein At1g67190
trEMBL	tr\|V7CXI0\|V7CXI0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW34887.1}

Sequence

Transcript Sequence

>Glyur001348s00036180.1
ATGGAGCACCTTCCTGTTGAAGTGATTGGTAATATACTATCAAATCTTGGCTCTGCCCGTGATGTTGTGATTGCTTCAGCAACTTGCAAGAAATGGAGGGAAGCTTGGCGCTGCCACCTCCACACTCTTTCTTTCAACTCTTGTGACTGGCCTATCTATCATGAATTAACCCCAAATAGGTTGGAAATACTCATCACTCAGACAATCTTTCAAACCAAGGCAGTGCAGTGCTTAACAATTTCCATGGATGATGTCCACGAGTTTTCTGCTGCCCCGGTCATTGCTTGGCTTATGTATACCAGGGAGTCCTTGCGCCGGTTGCACTATAATGTGAGGACGACCCCAAATTTGAACATCATTGAGAAATGTGGCAGGCAGAAGCTGGAAGTGTTGGCATTGGCTCGCAATTCTATTTCGGGTGTGGAGCCTGGTTATCAGAAGTTCCCTTGCTTGAAGTCGCTTTCGTTGAGTTTTGTTAGCATCTCGGCTCTGGATCTGAGCCTTCTACTTTATGCTTGTCCAAGGCTTGAAACATTGTCTATGGTAAGCCCAGAAATTGCCTTGTCGGATTCGCAGGCTTCCATGGAGCTTAGCAGTTCTTCGTTGAAGGATTTCTTTGTTGAGTCGTTTGGTTTAGACAAATTTGTATTAGAGGCAGATTTGCTCGAGAATTTACATCTTAAAGATTGTACCTTTGAGGTTTTTGAATTGATTGGCAAGGGGACATTGAAAGTGTTGAAGGTTGATGATGTGAGTGTCATCCATCTTGATATTGGCGAGAATACAGAGAACCTTGAGCTTATAGATGTCAGCAACTTCACAATTATGTGGCCAAAATTTTATCATATGATCTCAAAAGCATCAAAGTTACGTAGGCTTCGGCTGTGGGGGGTTGTTTTTGATGATGAGGACGAAGTTGTGGACTTAGAGACGATTTCTGTTTGTTTTCCTCAGTTGATGCACTTGTCCTTAAGTTATGATTTAAGAGATGGTGTACTTAATTATGGCTTGCAGGGTTTGTCTCTTCTGGTGAATGTGGTGGTGTTAGAACTTGGATGGACTTCAATCAGTGATCTTTTCTCAGTATGGGTAGCTGGACTTTTGGAAAGATGTCCCAACTTGAAAAAATTGGTCATTTATGGTTTTGTTTCAGAGGTCAAAACACACGAAGAGTGCCAAGTCTTTGCAAAATTTACTGAATTCATTCTTCAACTTGGTAGAAAATATATGCATGTAAAGGTAGAGTTTGAATATGAGTATACTCATTCATGCTTGTCAAAGCCTTCTTGGTTTAACATCATTCAGCAAGAAGGTTTGTCTCATTATTTGAACTTTCCTGGAAGTATGAATCCTGTTAGTGATAGATATGGAAAGGATACTTTTGTCCTTTGAAGTCTCACTCATTTGCACATGCATACATACCACCNTTACGATCAAAGATCTGGTTATCCAATAGCCATCCCTTGCTGGCAGCTTCACACTACACCAAAATTTGACTTAGTGGCAATTATTTAGCGGACATTAATTAATTGTTAGTACTTTCATCAACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01348	33985	36500	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001348s00036180.1	PF12937.2	F-box-like	2	35	2.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.639
SRR1783600	control	3.623
SRR1783602	moderate drought stress	4.593
SRR1811619	moderate drought stress	4.702

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.112
DRR006520	Root Summer glycyrrhizin high producing strain	5.186
DRR006521	Root Winter glycyrrhizin high producing strain	2.840
DRR006522	Root Winter glycyrrhizin high producing strain	2.869
DRR006523	Root Summer glycyrrhizin low producing strain	2.380
DRR006524	Root Summer glycyrrhizin low producing strain	2.574
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.743
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.781

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.518
SRR2868004	Drought Stress (root)	6.869
SRR2967015	Control (root)	6.686

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.371
SRR9715740	Leaf	2.675
SRR9715741	Leaf	2.934
SRR9715739	Root	2.779
SRR9715742	Root	1.726
SRR9715743	Root	2.097

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.799
SRR8749028	MeJA induced 9h	4.571
SRR8749029	MeJA induced 9h	1.711
SRR8749030	Uninduced	2.719
SRR8749031	Uninduced	3.836
SRR8749032	Uninduced	1.640

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.622
SRR8400027	Control - Root	5.564