Gene detail

Gene detail information of Glyur001347s00032236

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G09320.1	2.00E-81	DHHC-type zinc finger family protein
NR	XP_004514129.1	1.17E-130	PREDICTED: probable S-acyltransferase At3g09320-like isoform X1 [Cicer arietinum]
COG	YP_003571417.1	1.00E-32	menaquinone-specific isochorismate synthase [Salinibacter ruber M8]
Swissprot	tr\|Q93VV0\|ZDHC6_ARATH	4.00E-95	Probable protein S-acyltransferase 16
trEMBL	tr\|A0A072UT43\|A0A072UT43_MEDTR	2.00E-130	S-acyltransferase {ECO:0000256\|RuleBase:RU079119}

Sequence

Transcript Sequence

>Glyur001347s00032236.1
CTCCTACAAACACAAAGCCACCACCGTTTTCTCACTTTGCTTATAGTGGTGCTTCTCTTCCTCTCCTCCCTCTTCCTCATGCTCCCTCACACATAAAACTCATGGCAACCGCCACTACTCCCAAGTGGNTCACACACTTCCTCAACACAAAACGCAGCAACATCAACAACATCCTCGTACCTCCTCTTTCAAAGAGGCAACACCCCATGTATCTCACCCACCGCCACAGACCTATGTGTCAGGGATGCTACCTTTCAATGAACGGATGCAGCAGAGTGAGAGAAGGAGAGCACCAAGCAAGGAACCCTGTTGGGACCATAGAGACAAGAACCTTGGAACCAGTAGCAACACCTTCAATGGCCATGTACAGCCTCAACATGGCAATTTCAGAGCTGAAAGCAGACCCTCCATTTGGTACCTCATCTGGCATAGTGAGAGTGCAGGTGCCAATTGAAGAGGAGGTTGAGGCCATTGATTGGCTCCATTCACAAAACCACCTTCTCCTTCCTCGCTGCTTCTTCTCTGGTAGGGAACACAGTTCTTGCCCTGGTGACTTGGTCAGTGTTGCTGGTGTGGGTTCAGCTGTTTTCTTTTCTCAGCCACACCCTTTTTCCTATTGGGATTGGATATCTATTAGGAGGTTTCTTTCTGAGAGATGCCCTTTAATTCGTGCATATGGAGCTATTCGTTTCAATGCAAAAGCTAAGGTGTCATCAGATTGGCTGGCTTTTGGTTCTTTCTTCTTCATGATTCCTCAGGTTGTGCTAGCTCGTAGCACTAGAGTAGTGCCTACTGCTGATATTGATCCTCTTGCGTGGTTAGCTTGCTTAAAGGTTGAAGGTGAAAATGCTTACCAGTTTCTCCTTCAGCCGCCTAATGCACCGGCGTTTATTGGAAACACACCAGAGCAACTATTTCACAGAAAACGGCTCCATATTACTAGTGAGGCTTTGGCTGGAACCCGTGCTAGAGGAGCATCACTAGCACTAGACCGTCAAACTGAACTCGACCTCCTTACCAGGTTAAGAAGTGAAGGAGATGAGTTTGAAATTTTGTCGTCGCTTCACCCAAGTCCAGCAGTTTGTGGGTTTCCAACAGAAGAGGCACAGCTTTTAATTGCAGAAACAGAAGTGTTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAGGAGAGAGTGAGTTTGCTGTTGGCATCAGATCAGCATTGGTGGAACAGGACCTAGGTGCATTGATATATGCTGGAACAGGGATAGTGGAAGGAAGCAGTCCTTACTTGGAGTGGGATGAGCTAGAACTCAAGACATCCCAGAGTAAAATCAAAGACAACGGCAGTGTCTTCTGGATTTATTCATTCTTGAAAGTTAGAACAGGGGTCAGCATCAATTCATCCTCGTGTNGTGCGTTTTGGCTATTTTCTCTCGCGAAACGCCGTCGTTTTGCAATAAACGCCGGCGCCATGGCGGAGAAAGCGAAGCAGCAGCAGCAGAAGCAGAAGCGGCGCTTCGTTTTCTCGCTCCCCGTGTGCGTCGTCGTTTTGGGCATCGCGTACATTTACGTATCCACCGTGTTCGTTTTCATCGACCGGTGGCTCGGCCTCTTCTCCTCGCCCGGGATCGCAAACGCCGTCGTTTTCACCGCACTCGCATCCATCTGCGTCTTCTGCTATCGCTCCGCCATTTACGCGGATCCGGGTCGGGTTCCCTCCACCTACATCCCCGACGTTGAAGACCTCCAAATCCCCCTCCACGAGATCAAGCGCAAGGGTGGAGATTTGCGATATTGCCAAAAGTGTTCTCACTATAAGCCTCCCCGTGCACATCATTGCCGGGTCTTACTTGTTGGTAGTCTAACTTCTGATGGTATACGGGATGAAGAGAAAAACGGGAGCTCTTTCAGAAATGTTGTTTCTGGGCTCTTACTGGTCCCCTTATCTATGGCATTAAGTGTGCTTTTAGGATGGCATATCTATCTCATCCTACATAACAAGACCACGATAGAGTATTATGAAGGAGTGAGAGCTTTGTGGCTTCAAGAGAAGGGTGGGGCTATCTATAAACACCCATATGACCTTGGCCCATATGAGAATTTGACATCTGTTTTGGGACCAAATATCCTTACCTGGCTGTGGCCTACATCAAACCATATAGGTTCTGGACTTAGGTTCCGCACCGTCTATGATCTCACACCGGCTTATGTTTACACATTGTTTAATAATAATTTGGGATTAGGGTTTCCTGTTCATGAAACCTCTCTCTCTCCTACCAGAACCACCGTCCCAACCCAGCAGCCAGCCCCTCTTCCTCAAACTCCATCTCCCCTACCAGTACCACCACACTTCTTCTTCTTCTCTCCAACAATGGTTCTATCAAACAGAAGCTCAGAAGCAGCAGCAAACAAAAAACAGAAAAAGAAGACAGGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01347	33334	54708	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function

GO:0008270 zinc ion binding

GO:0008909 isochorismate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001347s00032236.1	PF00425.13	Chorismate_bind	218	305	3.40E-10
Glyur001347s00032236.1	PF00425.13	Chorismate_bind	307	403	7.80E-26
Glyur001347s00032236.1	PF01529.15	zf-DHHC	523	580	7.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.958
SRR1783600	control	8.579
SRR1783602	moderate drought stress	15.456
SRR1811619	moderate drought stress	14.890

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.624
DRR006520	Root Summer glycyrrhizin high producing strain	7.077
DRR006521	Root Winter glycyrrhizin high producing strain	7.773
DRR006522	Root Winter glycyrrhizin high producing strain	7.801
DRR006523	Root Summer glycyrrhizin low producing strain	9.303
DRR006524	Root Summer glycyrrhizin low producing strain	9.823
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.226
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.220

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.397
SRR2868004	Drought Stress (root)	21.415
SRR2967015	Control (root)	20.617

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.418
SRR9715740	Leaf	56.659
SRR9715741	Leaf	49.361
SRR9715739	Root	9.236
SRR9715742	Root	9.402
SRR9715743	Root	8.583

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.337
SRR8749028	MeJA induced 9h	13.886
SRR8749029	MeJA induced 9h	7.894
SRR8749030	Uninduced	4.525
SRR8749031	Uninduced	4.665
SRR8749032	Uninduced	7.715

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.986
SRR8400027	Control - Root	16.709