Gene detail

Gene detail information of Glyur001347s00032235.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77120.1	1.00E-77	alcohol dehydrogenase 1
NR	XP_010038347.1	1.04E-129	PREDICTED: alcohol dehydrogenase 3-like isoform X1 [Eucalyptus grandis]
COG	YP_001342516.1	3.00E-72	S-(hydroxymethyl)glutathione dehydrogenase [Marinomonas sp. MWYL1]
Swissprot	tr\|P28032\|ADH2_SOLLC	3.00E-122	Alcohol dehydrogenase 2
trEMBL	tr\|A0A061DPI7\|A0A061DPI7_THECC	4.00E-130	Alcohol dehydrogenase 1 {ECO:0000313\|EMBL:EOX94006.1}

Sequence

Transcript Sequence

>Glyur001347s00032235.1
CAGTGACACAGTCTTGCCCAAAGAGAGATATTTCTCAAACTGGTAACTTTGTACTCAGAAGATAACAAATAGTGTGTCACCAACAAAATGTCTAGCACTGCTGGTCTTGTGATCCCATGCAATGCTGCTGTTGCATGGGAAGCAGGGAAACCTTTGGTGATGGAACGTGTGGAGGTGGCTCCACCACAGGCTAAGGAGGTGAGGATCAAGGTCAAATACACCTCACTTTGCCACACTGATCTATTCTTCTGGGAGGCCAAGGGGCAAACTCCTCTGTTCCCCCGAATTTTTGGACACGAGGCATCTGGAATTGTGGAGAGTGTTGGATTTTTTTTCACAGATCTGCAGGTCGGGGACCATGTGCTCCCGGTGTTCACCGGGGAATGTGTTTTTTTTGCACATTGTAAATCTGAGGAAAGCAACATGTGTGACCTGCTGCGAATAGACACTTTTTTTTGAGTCATGCATAGTGATGGTAAAAGCAGATTCTCCATTAATGGTACCCCAATATTTTTTTTTGTTGGAACATCCACTTTTAGTGAATACACTGTTGTACATTCTGGCTGCCTAGTTTTTTTTAATCCACAAGCACCTTTGGATAAAGTCTGTATCCTCAGTTGCGGCATCTCAAGATTAGGAGCATCTTTAAATGTAGCAATTTTTTTTAAGGGCTCTACAGTAGCAATCTTTGGTCTAGGAGCTGTTGGCCTTGCTGCTGCAGAGGGTGCAAGAATTGCCGGTCCATCTAGAATTTTTTTTGTTAATTTGAACCCAAAGAGGTTTGAAGAAGCCNANAAATTTGGAGTAACCNAGTTTGTGAATCCTTTTTTTTATGATAAGCCTGTTCAAGAGGTGATTGCGGGTATGACGAATTTTTTTTTGGACCAAAGTATAGAGTGCACTGGAAACATCGATTTCATGATATCCGCTTTTGTTTTTTTTCATGATGGTTGGGGTTTTTTTTTGCTTGTTGGAGTACCCAATAAGGATGCAGTTTTCATGACCAAGCCCATCAATNTTTTTTTTGAAAGGACACTNAAGGGAACTTTCTTTGGAAATTACAAGCCCAGGACTGACCTTTTTTTTTTTGTTGATATGTATATGAATAAGAAATTGGAANTGGACAAGTTTATAACCCATAGAGTTCCTTTCTCTGATATCTTTTTTTTATTTGAATTAATGGTGAGAGGAGAGGGACTAAGGTGTATCATTAGCATGGATTTTGTACTCCCACCCAAAGTAGAATCTCCTACCACACATCCGAGTAGGGCTGGACAACTTCATTCAACCCGACCCGAACCTGAAAAACCTGACACTGGGCGAACCGAGTTGGGTGTATTTGTTGACTACTGCTTCATTGTTTCAGCAATGGAGCAGTCTAGTCAAAATCATACTCCTATGATAACACCACAGTCCACATACATCAACACTAAGTGGGACTCAAGGGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01347	13871	23898	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K18857	ADH1	EC:1.1.1.1	Glycolysis / Gluconeogenesis	map00010
			Glycolysis / Gluconeogenesis	map00010
			Fatty acid degradation	map00071
			Fatty acid degradation	map00071
			alpha-Linolenic acid metabolism	map00592
			alpha-Linolenic acid metabolism	map00592
			Tyrosine metabolism	map00350
			Tyrosine metabolism	map00350

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001347s00032235.1	PF00107.21	ADH_zinc_N	80	201	1.20E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	62.708
SRR1783600	control	63.609
SRR1783602	moderate drought stress	47.132
SRR1811619	moderate drought stress	46.242

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	73.050
DRR006520	Root Summer glycyrrhizin high producing strain	72.460
DRR006521	Root Winter glycyrrhizin high producing strain	75.788
DRR006522	Root Winter glycyrrhizin high producing strain	73.010
DRR006523	Root Summer glycyrrhizin low producing strain	69.016
DRR006524	Root Summer glycyrrhizin low producing strain	68.462
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.917
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.622

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.939
SRR2868004	Drought Stress (root)	4.714
SRR2967015	Control (root)	8.296

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.862
SRR9715740	Leaf	1.868
SRR9715741	Leaf	1.507
SRR9715739	Root	10.409
SRR9715742	Root	15.059
SRR9715743	Root	10.549

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.677
SRR8749028	MeJA induced 9h	7.639
SRR8749029	MeJA induced 9h	4.235
SRR8749030	Uninduced	0.998
SRR8749031	Uninduced	0.205
SRR8749032	Uninduced	1.272

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.820
SRR8400027	Control - Root	43.863