Gene detail information of Glyur001347s00032234 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13770.2 | 4.00E-17 | Protein of unknown function, DUF647 |
| NR | KHN29989.1 | 7.43E-19 | UPF0420 protein [Glycine soja] |
| Swissprot | tr|Q84JB8|RUS3_ARATH | 4.00E-19 | Protein root UVB sensitive 3 {ECO:0000303|PubMed:19515790} |
| trEMBL | tr|I1JEF1|I1JEF1_SOYBN | 3.00E-19 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G13010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01347 | 5623 | 10569 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001347s00032234.1 | PF04884.9 | DUF647 | 134 | 181 | 3.40E-12 |
| Glyur001347s00032234.1 | PF00071.17 | Ras | 170 | 213 | 7.70E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.683 |
| SRR1783600 | control | 2.612 |
| SRR1783602 | moderate drought stress | 3.118 |
| SRR1811619 | moderate drought stress | 3.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.828 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.855 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.094 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.050 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.758 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.999 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.233 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.461 |
| SRR2868004 | Drought Stress (root) | 0.385 |
| SRR2967015 | Control (root) | 0.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.668 |
| SRR9715740 | Leaf | 0.326 |
| SRR9715741 | Leaf | 0.166 |
| SRR9715739 | Root | 0.443 |
| SRR9715742 | Root | 0.706 |
| SRR9715743 | Root | 0.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.215 |
| SRR8749028 | MeJA induced 9h | 1.990 |
| SRR8749029 | MeJA induced 9h | 0.990 |
| SRR8749030 | Uninduced | 0.548 |
| SRR8749031 | Uninduced | 0.793 |
| SRR8749032 | Uninduced | 0.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.014 |
| SRR8400027 | Control - Root | 2.233 |